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Report for CCDS78570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78570.1 Public Mus musculus 1 23 108 98 CCDS HistoryNCBI Gene:269180Re-query CCDS DB by CCDS ID:78570.1Re-query CCDS DB by GeneID:269180See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058307.14 ENSMUSP00000057233.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058307.14Link to Ensembl Protein Viewer:ENSMUSP00000057233.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058307Re-query CCDS DB by Protein ID:ENSMUSP00000057233
Original member Current member NCBI NM_001290798.1 NP_001277727.1 Accepted alive Link to Nucleotide Sequence:NM_001290798.1Link to Protein Sequence:NP_001277727.1Re-query CCDS DB by Nucleotide ID:NM_001290798Re-query CCDS DB by Protein ID:NP_001277727Link to BLAST:NP_001277727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277727.1 679 Q9EPW0-2 679 98.8218% 0 8

Chromosomal Locations for CCDS 78570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37369335 37369488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37371702 37371806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37372311 37372419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37374272 37374289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37377578 37377761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37378841 37379059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37379922 37380060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37387698 37387870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37388787 37388910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37389650 37389776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37390049 37390189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37392943 37393040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37396070 37396182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37398766 37398920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37403449 37403629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGTGTGTGTGTTTTGCTTGCAGGGTATGTGAGTTGGAAGAGTTGGGGGAGCTGTCCCCTTGCTGGGAGA
GCCTCCGGCGCCAGATTGTCACCCAGTATCAGACTATCATCCTCACCTACCAGGAGAATCTGACTGACCT
CCATCAGTACAAAGGTCCTTCCTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAAGTTAGAATTTGTTCCC
ACAAACCTGCACATACAACGGATGCGAGTTCAAGATGATGGAGGCTCAGATCAGAACTACGATGTCGTCA
CTATTGGAGCCCCAGCAGCACACTGCCAAGGTTTTAAGTCAGGAGGTCTTCGAAAAAAGCTGCACAAGTT
TGAAGAGGCCAAGAAACACAGTTTTGAGGAGTGTTGTACATCTTCTAGTGGCCAGTCCATCATCTACATA
CCACAGGACATCACCCGAGCCAAGGAGATCATTGCCCAGATCAACACCCTAAAAACCCAGGTCAGCTACT
ACGCGGAACGGCTCTCAAGGGCTGCGAAGGACAGGTCAGCTACTGGCCTTGAGAGGACTCTCGCCATCTT
GGCAGACAAGACTCGGCAGTTGGTGACTGTCTGTGACTGTAAGCTGCTGGCCAACTCCATCCATGGGCTG
AATGCAGCTCGGCCCGACTACATCGCTTCCAAGGCCTCCCCTACCTCGACTGAGGAGGAGCAGGTGATGC
TTCGGAATGACCAGGACACCCTGATGGCCAGGTGGGCGGGGAGAAGCAGCCGGTCTTCCCTGCAGGTGGA
CTGGCATGAGGAGGAGTGGGAGAAAGTGTGGCTGAATGTGGACAAGAGCCTGGAGTGCATCATTCAGCGG
GTGGACAAGCTGCTGCAGAAGGAGCGTCTGCATGGGGAGGGCTGCGAGGATGCTTTCCCCTGTTCGAGCA
CCTGCTCCAGCAAGAAAGGTGAGTGGAGCGAGGCCCTTTACCCTCTGCTGACCACCCTCACAGACTGTGT
GGCCATGATGAGCGACAAGGCCAAGGCAGCCATGGTCTTCCTGCTCATGCAGGACAGTGCCCCCACCATT
GCCTCGTACCTCAGCCTGCAGTATCGCCGTGACGTCGTCTTCTGCCAAACCCTGACAGCCCTCATCTGTG
GCTTTATCATCAAGCTGAGGAACTGCCTGCACGACGGTGGCTTCCTGCGGCAGCTCTACACCATCGGCCT
TCTGGCCCAGTTTGAGAGCCTGCTGAGCACCTACGGAGAGGAGTTGGCCATGTTGGAGGACATGAGCCTT
GGAATCATGGACCTGAGGAATGTGACCTTTAAAGTCACTCAGGCCACTTCGAATGCATCAAATGACATGC
TGCCGGTCATCACAGGAAACCGGGATGGCTTTAACGTGCGGATCCCTCTGCCAGGCCCACTGTTTGACTC
CCTCCCCAGAGAGATCCAGAGTGGCATGCTGCTGCGGGTGCAGCCTGTCCTCTTCAACGTGGGCATCAAT
GAGCAACAGACACTGGCTGAGAGGTTTGGAGATACGTCCTTACAAGAAGTTATCAATGTGGAGAGCTTGG
TGCGGTTAAATTCCTACTTTGAGCAGTTTAAGGAGGTTTTGCCGGAGGACTGTCTACCTCGATCTCGGAG
TCAGACCTGCCTTCCAGAGCTGCTGCGGTTCCTGGGACAGAATGTCCATGCACGCAAGAATAAGAATGTG
GACATCCTCTGGCAAGCTGCTGAGGTCTGTCGCCGCCTTAACGGGGTCCGATTCACCAGCTGCAAGAGTG
CCAAGGACCGCACAGCCATGTCGGTGACCCTGGAGCAGTGTCTGATCCTGCAGCACGAGCACGGCATGGC
CCCGCAGGTCTTCACACAAGCCCTGGAGTGCATGCGCAGCATTGGAACACGGGAGGTAGTCACCCAGAAG
AACTTGAGCGGCCTGGTGCCCATCCGAGACTTAAGGCTAGACCCCAGCCTTCTCTGTTCCATTCCTTTAT
TAGCTCTAAGCCCCAATCTACTGATTGTGTGGCTCTTTCTGAGCATAGCGTACCTGGTGACCAAATTGCG
TTGCAAATAG

Translation (679 aa):
MCVCFACRVCELEELGELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSLKADKKLEFVP
TNLHIQRMRVQDDGGSDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEAKKHSFEECCTSSSGQSIIYI
PQDITRAKEIIAQINTLKTQVSYYAERLSRAAKDRSATGLERTLAILADKTRQLVTVCDCKLLANSIHGL
NAARPDYIASKASPTSTEEEQVMLRNDQDTLMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQR
VDKLLQKERLHGEGCEDAFPCSSTCSSKKGEWSEALYPLLTTLTDCVAMMSDKAKAAMVFLLMQDSAPTI
ASYLSLQYRRDVVFCQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYGEELAMLEDMSL
GIMDLRNVTFKVTQATSNASNDMLPVITGNRDGFNVRIPLPGPLFDSLPREIQSGMLLRVQPVLFNVGIN
EQQTLAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPEDCLPRSRSQTCLPELLRFLGQNVHARKNKNV
DILWQAAEVCRRLNGVRFTSCKSAKDRTAMSVTLEQCLILQHEHGMAPQVFTQALECMRSIGTREVVTQK
NLSGLVPIRDLRLDPSLLCSIPLLALSPNLLIVWLFLSIAYLVTKLRCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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