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Report for CCDS78660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78660.1 Public Mus musculus 1 Neu4 23 108 98 CCDS HistoryNCBI Gene:241159Re-query CCDS DB by CCDS ID:78660.1Re-query CCDS DB by GeneID:241159See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190212.6 ENSMUSP00000140127.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190212.6Link to Ensembl Protein Viewer:ENSMUSP00000140127.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190212Re-query CCDS DB by Protein ID:ENSMUSP00000140127
Original member Current member NCBI NM_001310769.1 NP_001297698.1 Accepted alive Link to Nucleotide Sequence:NM_001310769.1Link to Protein Sequence:NP_001297698.1Re-query CCDS DB by Nucleotide ID:NM_001310769Re-query CCDS DB by Protein ID:NP_001297698Link to BLAST:NP_001297698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297698.1 501 Q8BZL1-1 501 100% 0 0

Chromosomal Locations for CCDS 78660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 94021596 94021632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 94022358 94022590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 94022693 94022948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 94024437 94025416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGAGACTGCTGGAGCTCCCTTCTGCTTCCATGTGGACTCCCTGGTACCTTGCTCCTACTGGAAGGTTA
TGGGGCCCACGCGTGTTCCCAGGAGAACGGTGCTCTTCCAGAGGGAAAGGACGGGCCTGACCTACCGTGT
GCCTGCGTTACTCTGTGTGCCTCCCAGGCCTACTCTGCTGGCCTTCGCGGAACAGCGACTTAGCCCTGAT
GACTCCCATGCCCACCGCCTGGTGCTACGGAGGGGCACGCTGACCAGGGGCTCAGTGCGGTGGGGCACTC
TGAGTGTACTGGAGACTGCAGTACTGGAGGAGCACAGGTCTATGAACCCTTGCCCGGTGCTGGATGAGCA
CTCTGGTACCATCTTCCTCTTCTTCATTGCCGTGCTGGGCCACACACCGGAGGCCGTGCAAATCGCCACT
GGCAAGAACGCTGCTCGCCTCTGCTGTGTGACCAGCTGTGACGCTGGCCTCACCTGGGGCAGTGTTCGAG
ATCTCACTGAGGAAGCCATTGGTGCTGCATTGCAGGACTGGGCCACCTTTGCTGTGGGTCCGGGCCATGG
AGTTCAGCTGCGCTCGGGTCGCCTGCTTGTTCCTGCTTACACCTATCATGTGGACCGACGGGAATGTTTT
GGCAAGATCTGCTGGACCAGTCCCCACTCCTTGGCATTCTACAGTGATGATCATGGGATCTCCTGGCATT
GTGGAGGCCTTGTGCCCAACCTACGCTCTGGAGAGTGCCAACTGGCTGCGGTAGATGGAGACTTTCTCTA
CTGTAATGCTCGAAGCCCTCTGGGTAACCGTGTGCAGGCACTGAGTGCTGATGAAGGCACGTCCTTCCTA
CCAGGGGAGCTGGTGCCTACATTGGCAGAGACGGCTCGTGGTTGCCAGGGTAGCATTGTGGGCTTCCTAG
CTCCACCCTCAATCGAGCCTCAGGATGACCGGTGGACAGGGAGTCCTAGGAACACCCCACATTCCCCATG
CTTCAATCTCAGAGTACAGGAGTCTTCGGGGGAAGGTGCCAGAGGTCTTCTTGAACGTTGGATGCCCAGG
TTGCCTCTCTGCTACCCACAGTCCCGGAGCCCAGAGAATCATGGCCTAGAGCCTGGGTCAGATGGAGATA
AGACATCCTGGACTCCGGAATGTCCTATGTCCTCTGATTCCATGCTTCAGAGCCCCACATGGCTACTATA
TTCCCACCCAGCAGGGCGTAGAGCTCGGCTCCACATGGGAATCTACCTGAGCCGATCCCCCTTGGATCCC
CACAGCTGGACAGAGCCCTGGGTGATCTATGAGGGCCCCAGTGGCTACTCTGACCTTGCCTTTCTTGGGC
CTATGCCTGGGGCATCCCTGGTTTTTGCCTGTCTGTTTGAGAGCGGGACCAGGACTTCCTATGAAGACAT
TTCTTTTTGCTTGTTCTCACTGGCGGATGTCCTGGAGAATGTGCCCACTGGCTTAGAGATGCTAAGTCTC
AGGGATAAGGCTCAGGGGCATTGCTGGCCCTCTTGA

Translation (501 aa):
METAGAPFCFHVDSLVPCSYWKVMGPTRVPRRTVLFQRERTGLTYRVPALLCVPPRPTLLAFAEQRLSPD
DSHAHRLVLRRGTLTRGSVRWGTLSVLETAVLEEHRSMNPCPVLDEHSGTIFLFFIAVLGHTPEAVQIAT
GKNAARLCCVTSCDAGLTWGSVRDLTEEAIGAALQDWATFAVGPGHGVQLRSGRLLVPAYTYHVDRRECF
GKICWTSPHSLAFYSDDHGISWHCGGLVPNLRSGECQLAAVDGDFLYCNARSPLGNRVQALSADEGTSFL
PGELVPTLAETARGCQGSIVGFLAPPSIEPQDDRWTGSPRNTPHSPCFNLRVQESSGEGARGLLERWMPR
LPLCYPQSRSPENHGLEPGSDGDKTSWTPECPMSSDSMLQSPTWLLYSHPAGRRARLHMGIYLSRSPLDP
HSWTEPWVIYEGPSGYSDLAFLGPMPGASLVFACLFESGTRTSYEDISFCLFSLADVLENVPTGLEMLSL
RDKAQGHCWPS


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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