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Report for CCDS78957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78957.1 Public Mus musculus 11 Pemt 23 108 98 CCDS HistoryNCBI Gene:18618Re-query CCDS DB by CCDS ID:78957.1Re-query CCDS DB by GeneID:18618See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102693.8 ENSMUSP00000099754.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102693.8Link to Ensembl Protein Viewer:ENSMUSP00000099754.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000102693Re-query CCDS DB by Protein ID:ENSMUSP00000099754
Original member Current member NCBI NM_001290011.1 NP_001276940.1 Accepted alive Link to Nucleotide Sequence:NM_001290011.1Link to Protein Sequence:NP_001276940.1Re-query CCDS DB by Nucleotide ID:NM_001290011Re-query CCDS DB by Protein ID:NP_001276940Link to BLAST:NP_001276940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276940.1 236 Q61907-2 236 100% 0 0

Chromosomal Locations for CCDS 78957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59970818 59970875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59971184 59971258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59974068 59974179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59976839 59976984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59983443 59983558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60031713 60031820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60046340 60046435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGAAGAAAATACGAGCCCGACAACTGCACTTATCAGCAGCTCGGTAGCGGGGCACGACTGCTGTGGAG
GCTTCGGCAATATCGACTTCAGGCAGGCTGATCTCTTCGTTATGAGCTGGCTGCTGGGTTACATGGACCC
CACAGAGCCCAGCTTTGTGGCGGCTGTGATCACCATTGTGTTCAACCCACTCTTCTGGAATGTGGTAGCG
AGATGGGAGCAGAGAACTCGGAAGCTGAGCAGAGCCTTCGGCTCCCCCCACCTAGCCTGCTATTCCCTGG
GCATCTGCATCCTGCTTTTGAACATCCTCCGCTCCCACTGCTTCACACAGGCTATGATGAGCCAGCCCAA
GATGGAGGGCCTGGACAACCACACCACCTACTTCCTGGGCCTTGCATTCCTAGGTTGGGGATTCGTGTTT
GTGCTGTCCAGCTTCTATGCACTGGGGTTCACTGGGACCTTTCTAGGTGACTACTTTGGGATCCTCAAGG
AGTCCAGAGTGACCACATTTCCCTTCAGCGTGCTGGATAACCCCATGTACTGGGGCAGTACAGCCAACTA
CCTAGGCTGGGCACTCATGCATGCTAGTCCCACAGGCCTGCTGTTGACGGTGCTGGTGGCAATTGTCTAC
GTGGTTGCTCTCCTATATGAAGAGCCCTTCACTGCTGAGATCTACCGACAGAAAGCTACCAGGTTGCACA
AAAGAAGCTGA

Translation (236 aa):
MEENTSPTTALISSSVAGHDCCGGFGNIDFRQADLFVMSWLLGYMDPTEPSFVAAVITIVFNPLFWNVVA
RWEQRTRKLSRAFGSPHLACYSLGICILLLNILRSHCFTQAMMSQPKMEGLDNHTTYFLGLAFLGWGFVF
VLSSFYALGFTGTFLGDYFGILKESRVTTFPFSVLDNPMYWGSTANYLGWALMHASPTGLLLTVLVAIVY
VVALLYEEPFTAEIYRQKATRLHKRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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