NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7913.1 Public Homo sapiens 11 CHST1 24 110 108 CCDS HistoryNCBI Gene:8534Re-query CCDS DB by CCDS ID:7913.1Re-query CCDS DB by GeneID:8534See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7913.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308064.7 ENSP00000309270.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308064.7Link to Ensembl Protein Viewer:ENSP00000309270.2Re-query CCDS DB by Nucleotide ID:ENST00000308064Re-query CCDS DB by Protein ID:ENSP00000309270
Original member Current member NCBI NM_003654.6 NP_003645.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003654.6Link to Protein Sequence:NP_003645.1Re-query CCDS DB by Nucleotide ID:NM_003654Re-query CCDS DB by Protein ID:NP_003645Link to BLAST:NP_003645.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003645.1 411 O43916 411 100% 0 0

Chromosomal Locations for CCDS 7913.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 45649688 45650923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGCAATGTTCCTGGAAGGCCGTCCTCCTCCTTGCCCTGGCCTCCATTGCCATCCAGTACACGGCCATCC
GCACCTTCACCGCCAAGTCCTTTCACACCTGCCCCGGGCTGGCAGAGGCCGGGCTGGCCGAGCGACTGTG
CGAGGAGAGCCCCACCTTCGCCTACAACCTCTCCCGCAAGACCCACATCCTCATCCTGGCCACCACGCGC
AGTGGCTCCTCCTTCGTGGGCCAGCTCTTCAACCAGCACCTGGACGTCTTCTACCTGTTTGAGCCCCTCT
ACCACGTCCAGAACACGCTCATCCCCCGCTTCACCCAGGGCAAGAGCCCGGCCGACCGGCGGGTCATGCT
AGGCGCCAGCCGCGACCTCCTGCGGAGCCTCTACGACTGCGACCTCTACTTCCTGGAGAACTACATCAAG
CCGCCGCCGGTCAACCACACCACCGACAGGATCTTCCGCCGCGGGGCCAGCCGGGTCCTCTGCTCCCGGC
CTGTGTGCGACCCTCCGGGGCCAGCCGACCTGGTCCTGGAGGAGGGGGACTGTGTGCGCAAGTGCGGGCT
ACTCAACCTGACCGTGGCGGCCGAGGCGTGCCGCGAGCGCAGCCACGTGGCCATCAAGACGGTGCGCGTG
CCCGAGGTGAACGACCTGCGCGCCCTGGTGGAAGACCCGCGATTAAACCTCAAGGTCATCCAGCTGGTCC
GAGACCCCCGCGGCATTCTGGCTTCGCGCAGCGAGACCTTCCGCGACACGTACCGGCTCTGGCGGCTCTG
GTACGGCACCGGGAGGAAACCCTACAACCTGGACGTGACGCAGCTGACCACGGTGTGCGAGGACTTCTCC
AACTCCGTGTCCACCGGCCTCATGCGGCCCCCGTGGCTCAAGGGCAAGTACATGTTGGTGCGCTACGAGG
ACCTGGCTCGGAACCCTATGAAGAAGACCGAGGAGATCTACGGGTTCCTGGGCATCCCGCTGGACAGCCA
CGTGGCCCGCTGGATCCAGAACAACACGCGGGGCGACCCCACCCTGGGCAAGCACAAATACGGCACCGTG
CGAAACTCGGCGGCCACGGCCGAGAAGTGGCGCTTCCGCCTCTCCTACGACATCGTGGCCTTTGCCCAGA
ACGCCTGCCAGCAGGTGCTGGCCCAGCTGGGCTACAAGATCGCCGCCTCGGAGGAGGAGCTGAAGAACCC
CTCGGTCAGCCTGGTGGAGGAGCGGGACTTCCGCCCCTTCTCGTGA

Translation (411 aa):
MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLAEAGLAERLCEESPTFAYNLSRKTHILILATTR
SGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLYDCDLYFLENYIK
PPPVNHTTDRIFRRGASRVLCSRPVCDPPGPADLVLEEGDCVRKCGLLNLTVAAEACRERSHVAIKTVRV
PEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLDVTQLTTVCEDFS
NSVSTGLMRPPWLKGKYMLVRYEDLARNPMKKTEEIYGFLGIPLDSHVARWIQNNTRGDPTLGKHKYGTV
RNSAATAEKWRFRLSYDIVAFAQNACQQVLAQLGYKIAASEEELKNPSVSLVEERDFRPFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH