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Report for CCDS79639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79639.1 Public Mus musculus 18 Dpysl3 23 108 98 CCDS HistoryNCBI Gene:22240Re-query CCDS DB by CCDS ID:79639.1Re-query CCDS DB by GeneID:22240See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121805.8 ENSMUSP00000112928.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121805.8Link to Ensembl Protein Viewer:ENSMUSP00000112928.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121805Re-query CCDS DB by Protein ID:ENSMUSP00000112928
Original member NCBI NM_001291455.1 NP_001278384.1 Updated not alive Link to Nucleotide Sequence:NM_001291455.1Link to Protein Sequence:NP_001278384.1Re-query CCDS DB by Nucleotide ID:NM_001291455Re-query CCDS DB by Protein ID:NP_001278384
Current member NCBI NM_001291455.2 NP_001278384.1 Accepted alive Link to Nucleotide Sequence:NM_001291455.2Link to Protein Sequence:NP_001278384.1Re-query CCDS DB by Nucleotide ID:NM_001291455Re-query CCDS DB by Protein ID:NP_001278384Link to BLAST:NP_001278384.1

Chromosomal Locations for CCDS 79639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 43324332 43324420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43325725 43325887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43328325 43328504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43329691 43329861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43332872 43333013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43333881 43334037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43342242 43342362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43345106 43345174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43353881 43353961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43354743 43354804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43358234 43358398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43360962 43361146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43363503 43363591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43437830 43438207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGGCTTCGGGCCGAAGGGGTTGGGACAGCTCCCACGAGGACGACCTGCCTGTGTACTTGGCCCGTCCGG
GCACCACAGATCAGGTCCCACGGCAGAAGTACGGTGGCATGTTCTGCAACGTGGAGGGTGCCTTCGAGAG
CAAGACGTTGGATTTTGATGCCCTGAGTGTGGGACAGCGCGGCGCCAAGACTCCCCGGAGCAGCCAGGGC
AGCGGCCGTGGCGCAGGGAACCGGCCCGGGATGGAAGTGGACGCGCGCAGGGGCCCGGGCCGGGAGGAGA
GCAGGGAACCCGCGCCGGAGTCCCCCAAGCCCGCTGGGGTGGAGATCCGGAGCGCCACCGGCAAGGAGGT
CTTGCAGAACCTTGGTCCCAAGGACAAGAGTGACCGTCTTCTAATCAAGGGAGGGAGAATCGTCAATGAT
GATCAGTCCTTTTATGCTGATATTTACATGGAGGATGGCTTAATAAAGCAAATTGGAGACAATCTGATTG
TCCCCGGAGGTGTGAAGACCATCGAGGCCAACGGGAAGATGGTGATCCCTGGAGGCATTGACGTCCATAC
CCACTTCCAGATGCCTTACAAGGGAATGACCACAGTGGACGATTTCTTCCAAGGGACAAAGGCTGCCTTA
GCGGGAGGCACCACCATGATCATTGACCACGTGGTACCTGAACCTGAGTCTAGCCTGACAGAGGCCTATG
AAAAGTGGCGTGAGTGGGCCGATGGGAAGAGCTGCTGTGACTATGCTTTGCATGTGGACATCACCCACTG
GAATGACAGCGTCAAGCAGGAGGTACAGAGCCTCAGCAAGGAAAAAGGCGTTAACTCCTTCATGGTTTAC
ATGGCCTACAAGGATTTATATCAAGTGTCCAACACAGAGCTCTATGAGATCTTCACCTGCCTGGGAGAGC
TGGGGGCCATTGCTCAAGTTCATGCCGAGAATGGAGATATCATTGCCCAGGAGCAGGCACGGATGCTGGA
AATGGGGATAACCGGCCCAGAAGGCCACGTTCTGAGCAGACCGGAAGAGCTGGAAGCTGAGGCTGTGTTC
CGTGCCATCACCGTCGCCAGCCAGACCAACTGCCCCCTCTATGTCACCAAGGTCATGAGCAAGAGCGCGG
CTGATCTCATCTCACAAGCCAGGAAGAAAGGAAATGTGGTCTTTGGCGAGCCCATCACTGCCAGCCTGGG
AATAGATGGAACTCATTACTGGAGTAAGAACTGGGCCAAAGCAGCTGCGTTTGTGACATCCCCACCTCTG
AGCCCTGACCCTACCACACCTGACTACATCAACTCCTTGCTGGCCAGCGGGGATCTGCAGCTCTCTGGAA
GTGCCCACTGTACCTTTAGCACTGCCCAGAAAGCCATTGGGAAGGACAACTTCACAGCCATCCCTGAAGG
CACCAATGGCGTGGAGGAGCGTATGTCTGTCATCTGGGACAAGGCTGTGGCCACGGGGAAGATGGATGAA
AACCAGTTTGTGGCCGTGACAAGCACCAATGCTGCCAAGATATTCAACCTGTACCCTCGAAAGGGGAGAA
TAGCTGTGGGCTCTGACAGCGACCTTGTCATCTGGGATCCAGATGCCTTGAAGATTGTCTCTGCCAAGAA
CCACCAGTCGGTTGCCGAATACAACATCTTTGAAGGGATGGAGCTGCGTGGTGCACCTCTGGTGGTTATC
TGCCAGGGCAAGATCATGCTGGAAGATGGCAACCTGCACGTGACCCAGGGGGCTGGCCGCTTCATTCCCT
GCAGCCCATTCTCTGACTATGTCTATAAGCGCATTAAAGCAAGGAGGAAGATGGCAGACCTGCATGCAGT
CCCAAGAGGCATGTATGATGGACCAGTGTTTGACTTGACCACCACCCCCAAGGGGGGCACCCCAGCTGGC
TCTACTCGGGGCTCTCCCACTCGGCCAAACCCGCCAGTGAGGAACCTCCATCAGTCAGGATTTAGCCTGT
CAGGCACCCAAGTGGATGAGGGTGTCCGCTCAGCTAGCAAACGCATTGTGGCACCCCCTGGAGGCCGTTC
TAACATCACATCCCTGAGTTAA

Translation (683 aa):
MASGRRGWDSSHEDDLPVYLARPGTTDQVPRQKYGGMFCNVEGAFESKTLDFDALSVGQRGAKTPRSSQG
SGRGAGNRPGMEVDARRGPGREESREPAPESPKPAGVEIRSATGKEVLQNLGPKDKSDRLLIKGGRIVND
DQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVIPGGIDVHTHFQMPYKGMTTVDDFFQGTKAAL
AGGTTMIIDHVVPEPESSLTEAYEKWREWADGKSCCDYALHVDITHWNDSVKQEVQSLSKEKGVNSFMVY
MAYKDLYQVSNTELYEIFTCLGELGAIAQVHAENGDIIAQEQARMLEMGITGPEGHVLSRPEELEAEAVF
RAITVASQTNCPLYVTKVMSKSAADLISQARKKGNVVFGEPITASLGIDGTHYWSKNWAKAAAFVTSPPL
SPDPTTPDYINSLLASGDLQLSGSAHCTFSTAQKAIGKDNFTAIPEGTNGVEERMSVIWDKAVATGKMDE
NQFVAVTSTNAAKIFNLYPRKGRIAVGSDSDLVIWDPDALKIVSAKNHQSVAEYNIFEGMELRGAPLVVI
CQGKIMLEDGNLHVTQGAGRFIPCSPFSDYVYKRIKARRKMADLHAVPRGMYDGPVFDLTTTPKGGTPAG
STRGSPTRPNPPVRNLHQSGFSLSGTQVDEGVRSASKRIVAPPGGRSNITSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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