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Report for CCDS79797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79797.1 Public Mus musculus 2 Upp2 23 108 98 CCDS HistoryNCBI Gene:76654Re-query CCDS DB by CCDS ID:79797.1Re-query CCDS DB by GeneID:76654See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79797.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059102.12 ENSMUSP00000060437.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059102.12Link to Ensembl Protein Viewer:ENSMUSP00000060437.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000059102Re-query CCDS DB by Protein ID:ENSMUSP00000060437
Original member Current member NCBI NM_001289659.1 NP_001276588.1 Accepted alive Link to Nucleotide Sequence:NM_001289659.1Link to Protein Sequence:NP_001276588.1Re-query CCDS DB by Nucleotide ID:NM_001289659Re-query CCDS DB by Protein ID:NP_001276588Link to BLAST:NP_001276588.1

Chromosomal Locations for CCDS 79797.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 58755361 58755422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58761809 58761862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58763675 58763792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58771421 58771579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58774116 58774230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58777805 58778014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58780002 58780148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58790029 58790180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCTTCCATTTTGCCTGCTTCTAATAGATCCATGAGACCTGACAAGAATACATACGAGAGCCCTGGCT
GGACTGAGATTCCACAGTACAGACCAGGCTGCCCTCAGATTCACAGAAAACGGTCTGTGTATGTTAAGAA
TCCATACCTGGAAGGCATGGACGAAGACATTCTCTATCACTTGGATTTAGGAACCAAAACACACAACCTA
CCAGCAATGTTTGGGGATGTAAAGTTTGTCTGCGTTGGTGGGAGCCCGAACAGAATGAAGGCATTTGCAC
AGTTTATGCACAAGGAACTCCGGTTGGAGGGAGATGGAGAAGACATTGAAGACATCTGTGCGGGGACAGA
CAGATACTGCATGTTCAAAACAGGCCCCGTGCTCTCCGTCAGTCACGGGATGGGCATCCCCTCCATTTCC
ATTATGCTCCACGAACTCATCAAATTACTCCACCATGCACACTGCTGTGATGTTACCATCATCAGAATTG
GAACGTCAGGGGGAATTGGGATTGCACCAGGCTCCGTTGTAATAACAGATACAGCTGTAGACTCCTTCTT
CAAGCCTCGATTTGAGCAGGTCATCTTGGATAACGTGGTCACCCGAAGCACTGAGCTTGACAAAGAACTG
GCTAATGATCTGTTCAACTGTAGCAGAGAAATCCCCAATGTTCCAACCCTCATCGGACACACGATGTGTA
CCTATGACTTTTATGAAGGCCAAGGTCGCCTAGATGGGGCGTTATGCTCCTTTTCGAGAGAGAAAAAGCT
AGACTACTTGAAGAGAGCATACAGAGCTGGTGTCAGGAACATTGAAATGGAATCGACTGTGTTCGCAGCC
ATGTGTGGCCTGTGTGGCCTGAGAGCTGCTGTGGTCTGTGTGACACTTCTTGACAGACTCGAGAGTGACC
AAATCAATTTGTCCCATGATGTCCTGGTGGAGTACCAGCAACGGCCACAGCTTCTAATCTCAAATTTCAT
CAAAAAACAGCTTGGACTTTGTGACCAGATGTCATAA

Translation (338 aa):
MASILPASNRSMRPDKNTYESPGWTEIPQYRPGCPQIHRKRSVYVKNPYLEGMDEDILYHLDLGTKTHNL
PAMFGDVKFVCVGGSPNRMKAFAQFMHKELRLEGDGEDIEDICAGTDRYCMFKTGPVLSVSHGMGIPSIS
IMLHELIKLLHHAHCCDVTIIRIGTSGGIGIAPGSVVITDTAVDSFFKPRFEQVILDNVVTRSTELDKEL
ANDLFNCSREIPNVPTLIGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLKRAYRAGVRNIEMESTVFAA
MCGLCGLRAAVVCVTLLDRLESDQINLSHDVLVEYQQRPQLLISNFIKKQLGLCDQMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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