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Report for CCDS8003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8003.1 Public Homo sapiens 11 TKFC 24 110 108 CCDS HistoryNCBI Gene:26007Re-query CCDS DB by CCDS ID:8003.1Re-query CCDS DB by GeneID:26007See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394900.8 ENSP00000378360.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394900.8Link to Ensembl Protein Viewer:ENSP00000378360.3Re-query CCDS DB by Nucleotide ID:ENST00000394900Re-query CCDS DB by Protein ID:ENSP00000378360
Original member Current member NCBI NM_001351976.2 NP_001338905.1 Accepted alive Link to Nucleotide Sequence:NM_001351976.2Link to Protein Sequence:NP_001338905.1Re-query CCDS DB by Nucleotide ID:NM_001351976Re-query CCDS DB by Protein ID:NP_001338905Link to BLAST:NP_001338905.1
Original member Current member NCBI NM_015533.4 NP_056348.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015533.4Link to Protein Sequence:NP_056348.2Re-query CCDS DB by Nucleotide ID:NM_015533Re-query CCDS DB by Protein ID:NP_056348Link to BLAST:NP_056348.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338905.1 575 Q3LXA3-1 575 100% 0 0
NP_056348.2 575 Q3LXA3-1 575 100% 0 0

Chromosomal Locations for CCDS 8003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61334729 61334731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61337941 61338130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61339066 61339176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61339254 61339435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61341436 61341514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61341823 61341912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61342461 61342495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61342574 61342658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61342755 61342844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61343342 61343458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61343856 61343975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61344136 61344273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61345260 61345366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61345462 61345565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61345712 61345745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61345857 61345946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61346351 61346503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGACCTCCAAGAAGCTGGTGAACTCGGTGGCTGGCTGTGCTGATGACGCTCTTGCTGGCCTGGTGGCCT
GCAACCCCAACCTGCAGCTCCTGCAGGGCCACCGCGTGGCCCTCCGTTCTGACCTGGACAGCCTCAAGGG
CCGGGTGGCACTGCTGTCGGGTGGGGGCTCTGGCCATGAGCCTGCCCATGCTGGTTTCATAGGGAAGGGG
ATGCTGACTGGGGTCATCGCGGGAGCTGTGTTCACCTCCCCGGCAGTGGGCAGCATCCTGGCAGCCATCA
GGGCCGTGGCCCAGGCCGGCACAGTGGGGACGCTCCTTATCGTGAAGAACTACACTGGGGATCGGCTCAA
CTTCGGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGTGGAGATGGTGGTGATTGGGGACGAC
AGCGCCTTCACTGTCCTGAAGAAGGCAGGCCGGCGGGGGCTGTGCGGCACGGTGCTTATACACAAGGTGG
CAGGTGCTCTGGCTGAGGCTGGTGTGGGGCTGGAGGAGATCGCAAAGCAGGTGAACGTGGTCGCCAAGGC
CATGGGTACCCTGGGGGTGAGCTTATCCTCCTGCAGCGTCCCTGGTTCCAAACCCACCTTCGAGCTCTCA
GCCGACGAGGTGGAGCTGGGCCTGGGGATCCACGGGGAAGCTGGTGTGCGCCGGATAAAGATGGCAACCG
CCGATGAGATTGTGAAACTCATGCTCGACCACATGACAAACACCACCAACGCGTCCCATGTGCCTGTGCA
GCCCGGCTCCTCAGTTGTGATGATGGTCAACAACCTGGGTGGCCTGTCATTCCTGGAACTGGGCATCATA
GCCGACGCTACCGTCCGCTCCCTGGAGGGCCGCGGGGTGAAGATTGCCCGTGCCCTGGTGGGCACCTTCA
TGTCAGCACTGGAGATGCCTGGCATTTCTCTCACCCTCCTGCTGGTGGATGAGCCTCTCCTGAAACTGAT
AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTGCAGTCTCCATTACTGGGCGGAAGCGGAGC
CGGGTAGCCCCTGCCGAGCCCCAGGAGGCCCCTGATTCCACTGCTGCAGGAGGCTCAGCCTCGAAGCGGA
TGGCGCTGGTGCTGGAACGGGTGTGCAGCACTCTCCTGGGCCTGGAGGAACACCTGAATGCCCTGGACCG
GGCTGCTGGTGACGGCGACTGTGGCACCACCCACAGCCGTGCGGCCAGAGCAATCCAGGAGTGGCTGAAG
GAGGGCCCACCCCCTGCCAGCCCTGCCCAGCTGCTCTCCAAGTTGTCTGTCCTGCTCCTGGAGAAGATGG
GAGGCTCATCTGGGGCGCTCTATGGCCTGTTCCTGACTGCGGCTGCACAGCCCCTGAAGGCCAAGACCAG
CCTCCCAGCCTGGTCTGCTGCCATGGATGCCGGCCTGGAAGCCATGCAGAAGTATGGCAAGGCTGCTCCA
GGGGACAGGACTATGCTGGATTCTCTGTGGGCAGCGGGGCAGGAGCTCCAAGCCTGGAAGAGCCCAGGAG
CTGATCTGTTACAAGTCCTGACCAAAGCAGTCAAGAGTGCCGAAGCTGCAGCCGAGGCCACCAAGAATAT
GGAAGCTGGAGCCGGAAGAGCCAGTTATATCAGCTCAGCACGGCTGGAGCAGCCAGACCCCGGGGCGGTG
GCAGCTGCTGCCATCCTCCGGGCCATCTTGGAGGTCTTGCAGAGCTAG

Translation (575 aa):
MTSKKLVNSVAGCADDALAGLVACNPNLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHEPAHAGFIGKG
MLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGLAREQARAEGIPVEMVVIGDD
SAFTVLKKAGRRGLCGTVLIHKVAGALAEAGVGLEEIAKQVNVVAKAMGTLGVSLSSCSVPGSKPTFELS
ADEVELGLGIHGEAGVRRIKMATADEIVKLMLDHMTNTTNASHVPVQPGSSVVMMVNNLGGLSFLELGII
ADATVRSLEGRGVKIARALVGTFMSALEMPGISLTLLLVDEPLLKLIDAETTAAAWPNVAAVSITGRKRS
RVAPAEPQEAPDSTAAGGSASKRMALVLERVCSTLLGLEEHLNALDRAAGDGDCGTTHSRAARAIQEWLK
EGPPPASPAQLLSKLSVLLLEKMGGSSGALYGLFLTAAAQPLKAKTSLPAWSAAMDAGLEAMQKYGKAAP
GDRTMLDSLWAAGQELQAWKSPGADLLQVLTKAVKSAEAAAEATKNMEAGAGRASYISSARLEQPDPGAV
AAAAILRAILEVLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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