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Report for CCDS80243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80243.1 Public Mus musculus 5 Khk 23 108 98 CCDS HistoryNCBI Gene:16548Re-query CCDS DB by CCDS ID:80243.1Re-query CCDS DB by GeneID:16548See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031053.14 ENSMUSP00000031053.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031053.14Link to Ensembl Protein Viewer:ENSMUSP00000031053.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031053Re-query CCDS DB by Protein ID:ENSMUSP00000031053
Original member Current member NCBI NM_001310524.1 NP_001297453.1 Accepted alive Link to Nucleotide Sequence:NM_001310524.1Link to Protein Sequence:NP_001297453.1Re-query CCDS DB by Nucleotide ID:NM_001310524Re-query CCDS DB by Protein ID:NP_001297453Link to BLAST:NP_001297453.1

Chromosomal Locations for CCDS 80243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30921916 30922007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30924739 30924855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30926688 30926822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30927022 30927156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30928443 30928515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30929521 30929667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30930548 30930636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30930716 30930873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30930962 30931047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGAAGAGAAGCAGATCCTGTGCGTGGGGCTGGTGGTGCTGGACATCATCAATGTGGTGGACAAATACC
CAGAGGAAGACACGGATCGCAGGTGCCTGTCCCAGAGATGGCAGCGTGGAGGCAACGCATCCAACTCCTG
CACTGTCCTTTCCTTGCTTGGAGCCCGCTGTGCCTTCATGGGCTCTTTGGCCCCTGGCCACGTTGCCGAT
TTTGTCCTGGATGACCTCCGCCAACATTCTGTGGACTTACGATATGTGGTCCTTCAGACCGAGGGCTCCA
TCCCCACTTCTACAGTCATCATCAACGAGGCCAGCGGCAGCCGCACCATTCTGCACGCCTACAGCTTCCT
GGTGGCTGACTTCAGGCAGAGGGGCGTGGATGTGTCTCAAGTGACTTGGCAGAGCCAGGGAGATACCCCT
TGCTCTTGCTGCATCGTCAACAACTCCAATGGCTCCCGTACCATTATACTCTACGACACGAACCTGCCAG
ATGTGTCTGCTAAGGACTTTGAGAAGGTCGATCTGACCCGGTTCAAGTGGATCCACATTGAGGGCCGGAA
TGCATCGGAACAGGTGAAGATGCTGCAGCGGATAGAGGAGCACAATGCCAAGCAGCCTCTGCCACAGAAG
GTCCGGGTGTCGGTGGAGATAGAGAAGCCCCGTGAGGAGCTCTTCCAGTTGTTTAGCTATGGTGAGGTGG
TGTTTGTCAGCAAAGATGTGGCCAAGCACCTGGGGTTCCAGTCAGCAGTGGAGGCCCTGAGGGGCTTGTA
CAGTCGAGTGAAGAAAGGGGCTACGCTTGTCTGTGCCTGGGCTGAGGAGGGTGCCGATGCCCTGGGCCCC
GATGGTCAGCTGCTCCACTCAGATGCCTTCCCACCGCCCCGAGTAGTAGACACTCTTGGGGCTGGAGACA
CCTTCAATGCCTCTGTCATCTTCAGCCTCTCGAAGGGAAACAGCATGCAAGAGGCCCTGAGATTCGGGTG
CCAGGTGGCTGGCAAGAAGTGTGGCTTGCAGGGGTTTGATGGCATTGTGTGA

Translation (343 aa):
MEEKQILCVGLVVLDIINVVDKYPEEDTDRRCLSQRWQRGGNASNSCTVLSLLGARCAFMGSLAPGHVAD
FVLDDLRQHSVDLRYVVLQTEGSIPTSTVIINEASGSRTILHAYSFLVADFRQRGVDVSQVTWQSQGDTP
CSCCIVNNSNGSRTIILYDTNLPDVSAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEEHNAKQPLPQK
VRVSVEIEKPREELFQLFSYGEVVFVSKDVAKHLGFQSAVEALRGLYSRVKKGATLVCAWAEEGADALGP
DGQLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSKGNSMQEALRFGCQVAGKKCGLQGFDGIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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