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Report for CCDS80355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80355.1 Public Mus musculus 5 Slc26a1 23 108 98 CCDS HistoryNCBI Gene:231583Re-query CCDS DB by CCDS ID:80355.1Re-query CCDS DB by GeneID:231583See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119270.1 ENSMUSP00000113185.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119270.1Link to Ensembl Protein Viewer:ENSMUSP00000113185.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119270Re-query CCDS DB by Protein ID:ENSMUSP00000113185
Original member Current member NCBI NM_001310691.1 NP_001297620.1 Accepted alive Link to Nucleotide Sequence:NM_001310691.1Link to Protein Sequence:NP_001297620.1Re-query CCDS DB by Nucleotide ID:NM_001310691Re-query CCDS DB by Protein ID:NP_001297620Link to BLAST:NP_001297620.1

Chromosomal Locations for CCDS 80355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108671217 108672740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108673431 108674048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108674548 108674568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGGTGTTCACAGGAGAACAGATAAGCCAAAGAGCCTGGTGTGACAGGATGGATGCTTCTCCTGAGCCCC
AACAGAAGGGTGGGACACTGGTACTGGTCCGACGGCAGCCCCCTGTGTCCCAGGGCTTGCTGGAAACACT
GAAGGCCAGGCTGAAGAAGAGCTGCACCTGCAGTATGCCATGTGCTCAGGCTCTGGTGCAGGGTCTGTTT
CCTGCCATACACTGGCTGCCCCAGTACCGCCTTAAGGAATACCTAGCAGGTGATGTCATGTCAGGATTGG
TCATTGGCATTATCCTGGTGCCACAGGCCATAGCCTACTCACTGCTGGCTGGGTTACAACCCATCTATAG
CCTCTACACTTCCTTCTTTGCCAACCTGATCTACTTCCTCATGGGCACCTCCCGCCATGTTAATGTGGGC
ATCTTCAGCCTGCTGTGTCTCATGGTGGGTCAGGTGGTGGACAGAGAACTCCAGTTGGCTGGCTTTGACC
CTTCCCAGGATTCTCTAGGGCCCAAGAACAATGACAGCACCCTCAACAACTCAGCTACAACACTGATCAT
TGGGCTACAGGACTGCAGACGGGACTGCTATGCCATTCGGGTTGCCACTGCCCTTACTCTGATGGCCGGG
CTTTATCAGGTCCTCATGGGTATCCTCCGGCTGGGCTTCGTGTCTACCTATCTCTCACAACCACTGCTCG
ATGGCTTTGCTATGGGAGCTTCTGTGACCATCTTGACTTCTCAGGCAAAACACATGCTGGGTGTGCAGAT
CCCTCGGCACCAGGGCCTAGGCATGGTGGTCCACACATGGTTGAGCTTGCTGCAGAATGTGGGACAGGCC
AACATATGTGATGTGGTCACCAGTGCCCTGTGCCTAGGAGTGCTGCTGGCAGCTAAGGAACTCTCAGATC
GCTACCGACACCGTCTGAAGGTGCCAATACCCACAGAGTTATTTGTTATTGTGGTGGCCACAATTGTGTC
CCATTTTGGACAGCTCCATACACGGTTTGACTCGAGGGTGGCTGGCAACATTCCCACTGGTTTTGTGGCC
CCACAGGTACCAGACCCTAAGATAATGTGGCGTGTGGCCCTGGATGCCATGTCCCTGGCCCTCGTGGGCT
CAGCCTTCTCCATCTCCTTGGCAGAAATGTTTGCCCGTAGTCATGGCTACTCTGTCAGTGCCAACCAAGA
GCTGCTAGCTGTGGGCTGCTGCAATGTGCTGCCTGCCTTCTTCCACTGTTTTGCCACTAGTGCTGCTCTG
TCCAAAACTCTGGTGAAGATAGCCACTGGCTGCCAGACCCAGTTGTCCAGTGTGGTCAGTGCCGCTGTGG
TGTTGCTGGTGCTGCTGGTGCTGGCTCCACTGTTTCATGATCTGCAGCGATGTGTGCTAGCTTGTATCAT
TGTTGTCAGCCTGCGGGGGGCGCTGCGCAAGGTGAAGGATCTCCCACAACTTTGGCGGCTAAGCCCTGCC
GATGCACTGGTCTGGGTGGCTACTGCAGCTACCTGTGTGCTAGTCAGCACCGAGGCTGGACTATTAGCTG
GAGTGTTCTTCTCCCTGCTTAGCCTGGCAGGCCGTACACAGCGTCCACGGGCTGCCCTTCTTGCCCGAAT
TGGAGACTCCACCTTCTATGAGGATGCTGCTGAATTTGAGGGCCTCCTGCCCCCACCTGAGGTGCGAGTG
TTCCGTTTCACAGGTCCACTTTACTACGCCAACAAGGACTTCTTCCTTCGGTCTCTCTACAGACTCACAG
GGTTGGATGCAGGGCACTCAGCCACCAGGAAGGATCAGGGCCCGGAGGTAGGTGTCAGTAACAGGAGTCT
TGTCGATGGCAAGGATCTGGGTTCAGTGAGCAGTGGGGCTGGGCTGGTGGTACCCCTGGCATTTGGTTTC
CACACAGTGGTCATTGACTGTGCACCACTGCTGTTCCTGGATGTGGCTGGCATGGCCACATTGAAAGACC
TCCGCAGAGACTACAGGGCCTTGGACATCACCCTGCTTCTGGCTTGCTGCAGTCCCTCGGTGAGAGACAC
GTTGAGAAAAGGGGGCTTCCTTGGGGAAGAACAGGGAGCTGAAAATGAGCTGCTATTCCCCAGTGTGCAC
AGTGCTGTGGAGGCTGCATGTGCCCGCCGTGAGGAGCTGCTGGCTGCTGACTCTGCCCTCTAG

Translation (720 aa):
MVFTGEQISQRAWCDRMDASPEPQQKGGTLVLVRRQPPVSQGLLETLKARLKKSCTCSMPCAQALVQGLF
PAIHWLPQYRLKEYLAGDVMSGLVIGIILVPQAIAYSLLAGLQPIYSLYTSFFANLIYFLMGTSRHVNVG
IFSLLCLMVGQVVDRELQLAGFDPSQDSLGPKNNDSTLNNSATTLIIGLQDCRRDCYAIRVATALTLMAG
LYQVLMGILRLGFVSTYLSQPLLDGFAMGASVTILTSQAKHMLGVQIPRHQGLGMVVHTWLSLLQNVGQA
NICDVVTSALCLGVLLAAKELSDRYRHRLKVPIPTELFVIVVATIVSHFGQLHTRFDSRVAGNIPTGFVA
PQVPDPKIMWRVALDAMSLALVGSAFSISLAEMFARSHGYSVSANQELLAVGCCNVLPAFFHCFATSAAL
SKTLVKIATGCQTQLSSVVSAAVVLLVLLVLAPLFHDLQRCVLACIIVVSLRGALRKVKDLPQLWRLSPA
DALVWVATAATCVLVSTEAGLLAGVFFSLLSLAGRTQRPRAALLARIGDSTFYEDAAEFEGLLPPPEVRV
FRFTGPLYYANKDFFLRSLYRLTGLDAGHSATRKDQGPEVGVSNRSLVDGKDLGSVSSGAGLVVPLAFGF
HTVVIDCAPLLFLDVAGMATLKDLRRDYRALDITLLLACCSPSVRDTLRKGGFLGEEQGAENELLFPSVH
SAVEAACARREELLAADSAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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