NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80410.1 Public Mus musculus 5 Kmt5a 23 108 98 CCDS HistoryNCBI Gene:67956Re-query CCDS DB by CCDS ID:80410.1Re-query CCDS DB by GeneID:67956See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80410.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100709.6 ENSMUSP00000098275.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100709.6Link to Ensembl Protein Viewer:ENSMUSP00000098275.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100709Re-query CCDS DB by Protein ID:ENSMUSP00000098275
Original member NCBI NM_001310723.1 NP_001297652.1 Updated not alive Link to Nucleotide Sequence:NM_001310723.1Link to Protein Sequence:NP_001297652.1Re-query CCDS DB by Nucleotide ID:NM_001310723Re-query CCDS DB by Protein ID:NP_001297652
Current member NCBI NM_001310723.2 NP_001297652.1 Accepted alive Link to Nucleotide Sequence:NM_001310723.2Link to Protein Sequence:NP_001297652.1Re-query CCDS DB by Nucleotide ID:NM_001310723Re-query CCDS DB by Protein ID:NP_001297652Link to BLAST:NP_001297652.1

Chromosomal Locations for CCDS 80410.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124445561 124445728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124447214 124447370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124450661 124450880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124451286 124451373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124457059 124457118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124459775 124459965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124460488 124460698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGGCGAAGCGGGCGCCGTGGGGCGCCGCCGGCCCTTTCCCGGAGCGCCGCGGCGGCGCTGGTGGCGTC
GG
CAGCAGCAGCAGCAGCGGCGGCGGCAGCGCTGGTGGCCCGGCCGCGGCGAGGGCGAGGGTGCCGGCCG
C
GCCGCCATGGGCCTAGCCGGGCTGCAGGAGAACGTGTTTGCTGGGCAGTCAAAGATCTATGCCTACATG
AGT
CCGAACAAGTGCTCTGCAATGCGCTCTCCACTTCAGGAAGAGAACTCGGTTGCCCATCATGAGGTCA
AA
TGCCCGGGGAAACCATTAGCTGGAATCTACAGGAAGCGAGAAGAGAAAAGGAACACCGGGAACGTTAT
A
CGAAGCGCTGTGAAGTCAGATGAACAGAAGAGCAAAGACACCAGGAGAGGTCCCCTGGCGCCTTTTCCA
AAC
CAAAAATCCGAAGCAGCAGAACCTCCAAAAACTCCACCCCCATCATGTGATTCTACCAATGTAGCAG
TC
GCTAAGCAAGCCCTGAAAAAGTCCCTCAAGGGCAAACAGGCCCCTCGGAAAAAGTCTCAAGGGAAAAC
C
CAGCAGAATAGAAAACTCACAGATTTCTACCCTGTGCGGAGGAGTTCCCGGAAGAGCAAAGCTGAGCTG
CAG
TCTGAAGAAAGGAAGAAAATAGATGAGCTGATTGAGAGCGGGAAGGAAGAAGGCATGAAGATTGATC
TA
ATTGATGGCAAAGGCAGGGGTGTGATCGCTACCAAGCAGTTCTCCAGGGGAGACTTTGTGGTAGAATA
C
CATGGGGACCTCATTGAAATCACTGATGCCAAGAAGCGGGAGGCTCTGTACGCACAGGACCCCTCCACT
GGC
TGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACTGCGTGGATGCCACTCAAGAAACGAACC
GC
CTAGGGAGACTCATCAATCACAGTAAGTGTGGGAACTGCCAGACCAAACTGCACGACATCGACGGCGT
G
CCTCACCTCATCCTCATCGCCTCCCGAGACATCGCAGCTGGGGAGGAGCTCCTGTACGACTATGGGGAC
CGA
AGCAAGGCCTCCATCGAAGCCTACCCCTGGCTGAAGCACTAA


Translation (364 aa):
MGEAGAVGRRRPFPGAPRRRWWRRQQQQQRRRQRWWPGRGEGEGAGRAAMGLAGLQENVFAGQSKIYAYM
S
PNKCSAMRSPLQEENSVAHHEVKCPGKPLAGIYRKRE
EKRNTGNVIRSAVKSDEQKSKDTRRGPLAPFP
N
QKSEAAEPPKTPPPSCDSTNVAVAKQALKKSLKGKQAPRK
KSQGKTQQNRKLTDFYPVRRSSRKSKAEL
Q
SEERKKIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPST
G
CYMYYFQYLSKTY
CVDATQETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD
R
SKASIEAYPWLKH




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser