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Report for CCDS80411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80411.1 Public Mus musculus 5 Kmt5a 23 108 98 CCDS HistoryNCBI Gene:67956Re-query CCDS DB by CCDS ID:80411.1Re-query CCDS DB by GeneID:67956See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198451.1 ENSMUSP00000143207.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198451.1Link to Ensembl Protein Viewer:ENSMUSP00000143207.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198451Re-query CCDS DB by Protein ID:ENSMUSP00000143207
Original member NCBI NM_001310725.1 NP_001297654.1 Updated not alive Link to Nucleotide Sequence:NM_001310725.1Link to Protein Sequence:NP_001297654.1Re-query CCDS DB by Nucleotide ID:NM_001310725Re-query CCDS DB by Protein ID:NP_001297654
Current member NCBI NM_001310725.2 NP_001297654.1 Accepted alive Link to Nucleotide Sequence:NM_001310725.2Link to Protein Sequence:NP_001297654.1Re-query CCDS DB by Nucleotide ID:NM_001310725Re-query CCDS DB by Protein ID:NP_001297654Link to BLAST:NP_001297654.1
Original member NCBI NM_001310727.1 NP_001297656.1 Updated not alive Link to Nucleotide Sequence:NM_001310727.1Link to Protein Sequence:NP_001297656.1Re-query CCDS DB by Nucleotide ID:NM_001310727Re-query CCDS DB by Protein ID:NP_001297656
Current member NCBI NM_001310727.2 NP_001297656.1 Accepted alive Link to Nucleotide Sequence:NM_001310727.2Link to Protein Sequence:NP_001297656.1Re-query CCDS DB by Nucleotide ID:NM_001310727Re-query CCDS DB by Protein ID:NP_001297656Link to BLAST:NP_001297656.1

Chromosomal Locations for CCDS 80411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124447253 124447370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124450661 124450880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124451286 124451373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124457059 124457118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124459775 124459965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124460488 124460698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGAGTCCGAACAAGTGCTCTGCAATGCGCTCTCCACTTCAGGAAGAGAACTCGGTTGCCCATCATGAGG
TCAAATGCCCGGGGAAACCATTAGCTGGAATCTACAGGAAGCGAGAAGAGAAAAGGAACACCGGGAACGT
TATACGAAGCGCTGTGAAGTCAGATGAACAGAAGAGCAAAGACACCAGGAGAGGTCCCCTGGCGCCTTTT
CCAAACCAAAAATCCGAAGCAGCAGAACCTCCAAAAACTCCACCCCCATCATGTGATTCTACCAATGTAG
CAGTCGCTAAGCAAGCCCTGAAAAAGTCCCTCAAGGGCAAACAGGCCCCTCGGAAAAAGTCTCAAGGGAA
AACCCAGCAGAATAGAAAACTCACAGATTTCTACCCTGTGCGGAGGAGTTCCCGGAAGAGCAAAGCTGAG
CTGCAGTCTGAAGAAAGGAAGAAAATAGATGAGCTGATTGAGAGCGGGAAGGAAGAAGGCATGAAGATTG
ATCTAATTGATGGCAAAGGCAGGGGTGTGATCGCTACCAAGCAGTTCTCCAGGGGAGACTTTGTGGTAGA
ATACCATGGGGACCTCATTGAAATCACTGATGCCAAGAAGCGGGAGGCTCTGTACGCACAGGACCCCTCC
ACTGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACTGCGTGGATGCCACTCAAGAAACGA
ACCGCCTAGGGAGACTCATCAATCACAGTAAGTGTGGGAACTGCCAGACCAAACTGCACGACATCGACGG
CGTGCCTCACCTCATCCTCATCGCCTCCCGAGACATCGCAGCTGGGGAGGAGCTCCTGTACGACTATGGG
GACCGAAGCAAGGCCTCCATCGAAGCCTACCCCTGGCTGAAGCACTAA

Translation (295 aa):
MSPNKCSAMRSPLQEENSVAHHEVKCPGKPLAGIYRKREEKRNTGNVIRSAVKSDEQKSKDTRRGPLAPF
PNQKSEAAEPPKTPPPSCDSTNVAVAKQALKKSLKGKQAPRKKSQGKTQQNRKLTDFYPVRRSSRKSKAE
LQSEERKKIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPS
TGCYMYYFQYLSKTYCVDATQETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYG
DRSKASIEAYPWLKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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