NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS81149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81149.1 Public Mus musculus X Gk 23 108 98 CCDS HistoryNCBI Gene:14933Re-query CCDS DB by CCDS ID:81149.1Re-query CCDS DB by GeneID:14933See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81149.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113978.8 ENSMUSP00000109611.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113978.8Link to Ensembl Protein Viewer:ENSMUSP00000109611.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113978Re-query CCDS DB by Protein ID:ENSMUSP00000109611
Original member Current member NCBI NM_001294140.1 NP_001281069.1 Accepted alive Link to Nucleotide Sequence:NM_001294140.1Link to Protein Sequence:NP_001281069.1Re-query CCDS DB by Nucleotide ID:NM_001294140Re-query CCDS DB by Protein ID:NP_001281069Link to BLAST:NP_001281069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281069.1 559 Q64516-3 559 100% 0 0

Chromosomal Locations for CCDS 81149.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 85704386 85704396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85706238 85706324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85711051 85711131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85712342 85712485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85712599 85712719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85713274 85713358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85714342 85714438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85715665 85715743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85730202 85730282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85730883 85730925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85736833 85736900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85737314 85737349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85739222 85739239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85740295 85740361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85741067 85741176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85743714 85743851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85746225 85746301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85754332 85754409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85760575 85760681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85761334 85761407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85776426 85776503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGCAGCCGCGAAGAAAGCAGTTCTGGGGCCATTGGTGGGAGCAGTGGACCAGGGTACCAGCTCGACAC
GTTTTTTGGTTTTCAATTCAAAAACAGCTGAACTTCTTAGTCATCATCAAGTAGAAATAAAACAGGAATT
CCCAAGAGAAGGATGGGTAGAACAAGACCCGAAGGAAATTCTGCAGTCTGTTTATGAGTGTATAGAGAAA
ACGTGTGAGAAACTTGGACAGCTCAATATTGATATTTCCAACATCAAAGCCATTGGTGTCAGCAACCAGA
GGGAAACCACAGTAGTCTGGGACAAGGTCACCGGAGAGCCTCTCTATAATGCCGTGGTGTGGCTTGACCT
AAGAACCCAGTCTACTGTTGAGAACCTTAGTAAAAGAATTCCAGGAAATAATAACTTTGTCAAGTCCAAG
ACAGGCCTTCCACTTAGCACGTATTTCAGTGCAGTGAAACTTCGTTGGCTCCTTGACAACGTGAAAAAGG
TCCAAGAGGCTGTTGAAGAAAATAGAGCTCTTTTTGGGACCATTGATTCATGGCTTATTTGGAGTTTAAC
AGGAGGAATCCATGGGGGTGTCCACTGTACAGATGTAACAAATGCAAGCAGGACGATGCTTTTTAACATT
CATTCTTTGGAATGGGATAAAGAGCTCTGCGAATTTTTTGGAATTCCAATGGAAATTCTTCCCAACGTTC
GGAGTTCTTCTGAGATCTATGGCCTAATGAAAATCTCTCATAGCCTGAAAGCTGGGGCCTTGGAAGGTGT
ACCAATATCTGGGTGTTTGGGGGACCAGTCTGCTGCTTTGGTGGGACAAATGTGCTTCCAGGATGGACAG
GCCAAAAACACGTATGGAACAGGGTGCTTCTTATTGTGCAACACGGGCCATAAGTGTGTATTTTCTGAAC
ATGGCCTCCTGACAACCGTAGCATATAAACTTGGCAGAGACAAACCTGTGTATTATGCGTTGGAAGGTTC
CGTGGCTATAGCTGGTGCTGTAATCCGCTGGCTAAGAGACAACCTTGGAATTATTAAGTCCTCTGAGGAA
ATTGAAAAACTTGCTAAGGAAGTAGGTACTTCTTATGGCTGCTACTTCGTTCCAGCATTTTCAGGGTTAT
ATGCGCCTTATTGGGAGCCCAGTGCAAGAGGGATCATCTGTGGACTCACTCAGTTCACCAATAAATGTCA
TATCGCTTTTGCTGCACTAGAAGCTGTTTGTTTCCAAACCCGAGAGATTTTGGATGCCATGAATCGCGAC
TGTGGAATTCCACTCAGTCATTTACAGGTAGATGGAGGAATGACCAGCAATAAAATTCTTATGCAGCTAC
AAGCAGACATTCTGTATATTCCAGTAGTGAAACCCTCCATGCCTGAAACAACTGCACTAGGCGCTGCCAT
GGCAGCTGGGGCTGCAGAGGGGGTTGGTGTGTGGAGTCTTGAACCTGAGGATTTGTCAGCTGTCACAATG
GAGCGGTTTGAACCTCAGATCAATGCTGAAGAAAGCGAAATCCGTTACTCCACATGGAAGAAAGCTGTGA
TGAAGTCAATTGGTTGGGTTACAACTCAGTCTCCAGAAAGTGGTGACCCTAGTATCTTCTGTAGTCTGCC
TTTGGGCTTTTTTATAGTGAGTAGCATGGTAATGTTAATCGGAGCAAGGTACATCTCAGGTATCCCATAA

Translation (559 aa):
MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK
TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKVTGEPLYNAVVWLDLRTQSTVENLSKRIPGNNNFVKSK
TGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTIDSWLIWSLTGGIHGGVHCTDVTNASRTMLFNI
HSLEWDKELCEFFGIPMEILPNVRSSSEIYGLMKISHSLKAGALEGVPISGCLGDQSAALVGQMCFQDGQ
AKNTYGTGCFLLCNTGHKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEE
IEKLAKEVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRD
CGIPLSHLQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEGVGVWSLEPEDLSAVTM
ERFEPQINAEESEIRYSTWKKAVMKSIGWVTTQSPESGDPSIFCSLPLGFFIVSSMVMLIGARYISGIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH