NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8208.1 Public Homo sapiens 11 LRRC51 24 110 108 CCDS HistoryNCBI Gene:120356739Re-query CCDS DB by CCDS ID:8208.1Re-query CCDS DB by GeneID:120356739See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8208.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289488.8 ENSP00000289488.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289488.8Link to Ensembl Protein Viewer:ENSP00000289488.2Re-query CCDS DB by Nucleotide ID:ENST00000289488Re-query CCDS DB by Protein ID:ENSP00000289488
Original member Current member EBI ENST00000538413.6 ENSP00000438762.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538413.6Link to Ensembl Protein Viewer:ENSP00000438762.2Re-query CCDS DB by Nucleotide ID:ENST00000538413Re-query CCDS DB by Protein ID:ENSP00000438762
Original member Current member EBI ENST00000538478.5 ENSP00000444583.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538478.5Link to Ensembl Protein Viewer:ENSP00000444583.1Re-query CCDS DB by Nucleotide ID:ENST00000538478Re-query CCDS DB by Protein ID:ENSP00000444583
Original member Current member EBI ENST00000647530.1 ENSP00000494072.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647530.1Link to Ensembl Protein Viewer:ENSP00000494072.1Re-query CCDS DB by Nucleotide ID:ENST00000647530Re-query CCDS DB by Protein ID:ENSP00000494072
Original member Current member EBI ENST00000642648.1 ENSP00000494362.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642648.1Link to Ensembl Protein Viewer:ENSP00000494362.1Re-query CCDS DB by Nucleotide ID:ENST00000642648Re-query CCDS DB by Protein ID:ENSP00000494362
Original member Current member NCBI NM_001318803.2 NP_001305732.1 Accepted alive Link to Nucleotide Sequence:NM_001318803.2Link to Protein Sequence:NP_001305732.1Re-query CCDS DB by Nucleotide ID:NM_001318803Re-query CCDS DB by Protein ID:NP_001305732Link to BLAST:NP_001305732.1
Original member Current member NCBI NM_145309.6 NP_660352.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145309.6Link to Protein Sequence:NP_660352.1Re-query CCDS DB by Nucleotide ID:NM_145309Re-query CCDS DB by Protein ID:NP_660352Link to BLAST:NP_660352.1

Chromosomal Locations for CCDS 8208.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72089084 72089165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72093496 72093701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72094948 72095096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72095379 72095520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGAACAAACGGGACTATATGAACACTTCGGTACAGGAGCCCCCTCTTGACTACTCCTTCAGAAGCATCC
ACGTCATTCAAGATCTGGTAAATGAGGAGCCAAGGACAGGACTACGACCACTGAAGCGTTCAAAGTCGGG
GAAATCACTGACCCAGTCCCTGTGGCTGAATAACAATGTTCTCAATGATCTGAGAGACTTCAACCAGGTG
GCTTCACAGCTGTTGGAGCACCCAGAGAACCTGGCCTGGATCGACCTGTCCTTTAATGACCTGACTTCCA
TTGACCCTGTCCTAACAACTTTCTTCAACCTGAGTGTCCTCTATCTTCACGGCAACAGCATCCAGCGCCT
GGGGGAGGTGAATAAGCTGGCTGTCCTTCCTCGGCTCCGTAGCCTGACACTCCATGGGAACCCCATGGAG
GAAGAGAAAGGGTATAGGCAATATGTGCTGTGCACCCTGTCCCGTATCACCACGTTCGACTTCAGTGGGG
TCACCAAAGCAGACCGCACCACAGCTGAAGTCTGGAAACGCATGAACATCAAGCCCAAGAAGGCCTGGAC
CAAGCAGAATACACTTTGA

Translation (192 aa):
MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQV
ASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPME
EEKGYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKKAWTKQNTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH