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Report for CCDS8235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8235.1 Public Homo sapiens 11 SLCO2B1 24 110 108 CCDS HistoryNCBI Gene:11309Re-query CCDS DB by CCDS ID:8235.1Re-query CCDS DB by GeneID:11309See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8235.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289575.10 ENSP00000289575.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289575.10Link to Ensembl Protein Viewer:ENSP00000289575.5Re-query CCDS DB by Nucleotide ID:ENST00000289575Re-query CCDS DB by Protein ID:ENSP00000289575
Original member Current member NCBI NM_007256.5 NP_009187.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007256.5Link to Protein Sequence:NP_009187.1Re-query CCDS DB by Nucleotide ID:NM_007256Re-query CCDS DB by Protein ID:NP_009187Link to BLAST:NP_009187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009187.1 709 O94956-1 709 100% 0 0

Chromosomal Locations for CCDS 8235.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75151382 75151397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75162655 75162785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75163963 75164100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75165787 75165949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75169173 75169406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75169666 75169764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75172379 75172569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75188136 75188238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75193218 75193575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75196514 75196679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75200224 75200387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75202901 75202965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75203307 75203427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75204400 75204580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGGACCCAGGATAGGGCCAGCGGGTGAGGTACCCCAGGTACCAGACAAGGAAACCAAAGCCACAATGG
GCACAGAAAACACACCTGGAGGCAAAGCCAGCCCAGACCCTCAGGACGTGCGGCCAAGTGTGTTCCATAA
CATCAAGCTGTTCGTTCTGTGCCACAGCCTGCTGCAGCTGGCGCAGCTCATGATCTCCGGCTACCTAAAG
AGCTCCATCTCCACAGTGGAGAAGCGCTTCGGCCTCTCCAGCCAGACGTCGGGGCTGCTGGCCTCCTTCA
ACGAGGTGGGGAACACAGCCTTGATTGTGTTTGTGAGCTATTTTGGCAGCCGGGTGCACCGACCCCGAAT
GATTGGCTATGGGGCTATCCTTGTGGCCCTGGCGGGCCTGCTCATGACTCTCCCGCACTTCATCTCGGAG
CCATACCGCTACGACAACACCAGCCCTGAGGATATGCCACAGGACTTCAAGGCTTCCCTGTGCCTGCCCA
CAACCTCGGCCCCAGCCTCGGCCCCCTCCAATGGCAACTGCTCAAGCTACACAGAAACCCAGCATCTGAG
TGTGGTGGGGATCATGTTCGTGGCACAGACCCTGCTGGGCGTGGGCGGGGTGCCCATTCAGCCCTTTGGC
ATCTCCTACATCGATGACTTTGCCCACAACAGCAACTCGCCCCTCTACCTCGGGATCCTGTTTGCAGTGA
CCATGATGGGGCCAGGCCTGGCCTTTGGGCTGGGCAGCCTCATGCTGCGCCTTTATGTGGACATTAACCA
GATGCCAGAAGGTGGTATCAGCCTGACCATAAAGGACCCCCGATGGGTGGGTGCCTGGTGGCTGGGTTTC
CTCATCGCTGCCGGTGCAGTGGCCCTGGCTGCCATCCCCTACTTCTTCTTCCCCAAGGAAATGCCCAAGG
AAAAACGTGAGCTTCAGTTTCGGCGAAAGGTCTTAGCAGTCACAGACTCACCTGCCAGGAAGGGCAAGGA
CTCTCCCTCTAAGCAGAGCCCTGGGGAGTCCACGAAGAAGCAGGATGGCCTAGTCCAGATTGCACCAAAC
CTGACTGTGATCCAGTTCATTAAAGTCTTCCCCAGGGTGCTGCTGCAGACCCTACGCCACCCCATCTTCC
TGCTGGTGGTCCTGTCCCAGGTATGCTTGTCATCCATGGCTGCGGGCATGGCCACCTTCCTGCCCAAGTT
CCTGGAGCGCCAGTTTTCCATCACAGCCTCCTACGCCAACCTGCTCATCGGCTGCCTCTCCTTCCCTTCG
GTCATCGTGGGCATCGTGGTGGGTGGCGTCCTGGTCAAGCGGCTCCACCTGGGCCCTGTGGGATGCGGTG
CCCTTTGCCTGCTGGGGATGCTGCTGTGCCTCTTCTTCAGCCTGCCGCTCTTCTTTATCGGCTGCTCCAG
CCACCAGATTGCGGGCATCACACACCAGACCAGTGCCCACCCTGGGCTGGAGCTGTCTCCAAGCTGCATG
GAGGCCTGCTCCTGCCCATTGGACGGCTTTAACCCTGTCTGCGACCCCAGCACTCGTGTGGAATACATCA
CACCCTGCCACGCAGGCTGCTCAAGCTGGGTGGTCCAGGATGCTCTGGACAACAGCCAGGTTTTCTACAC
CAACTGCAGCTGCGTGGTGGAGGGCAACCCCGTGCTGGCAGGATCCTGCGACTCAACGTGCAGCCATCTG
GTGGTGCCCTTCCTGCTCCTGGTCAGCCTGGGCTCGGCCCTGGCCTGTCTCACCCACACACCCTCCTTCA
TGCTCATCCTAAGAGGAGTGAAGAAAGAAGACAAGACTTTGGCTGTGGGCATCCAGTTCATGTTCCTGAG
GATTTTGGCCTGGATGCCCAGCCCCGTGATCCACGGCAGCGCCATCGACACCACCTGTGTGCACTGGGCC
CTGAGCTGTGGGCGTCGAGCTGTCTGTCGCTACTACAATAATGACCTGCTCCGAAACCGGTTCATCGGCC
TCCAGTTCTTCTTCAAAACAGGTTCTGTGATCTGCTTCGCCTTAGTTTTGGCTGTCCTGAGGCAGCAGGA
CAAAGAGGCAAGGACCAAAGAGAGCAGATCCAGCCCTGCCGTAGAGCAGCAATTGCTAGTGTCGGGGCCA
GGGAAGAAGCCAGAGGATTCCCGAGTGTGA

Translation (709 aa):
MGPRIGPAGEVPQVPDKETKATMGTENTPGGKASPDPQDVRPSVFHNIKLFVLCHSLLQLAQLMISGYLK
SSISTVEKRFGLSSQTSGLLASFNEVGNTALIVFVSYFGSRVHRPRMIGYGAILVALAGLLMTLPHFISE
PYRYDNTSPEDMPQDFKASLCLPTTSAPASAPSNGNCSSYTETQHLSVVGIMFVAQTLLGVGGVPIQPFG
ISYIDDFAHNSNSPLYLGILFAVTMMGPGLAFGLGSLMLRLYVDINQMPEGGISLTIKDPRWVGAWWLGF
LIAAGAVALAAIPYFFFPKEMPKEKRELQFRRKVLAVTDSPARKGKDSPSKQSPGESTKKQDGLVQIAPN
LTVIQFIKVFPRVLLQTLRHPIFLLVVLSQVCLSSMAAGMATFLPKFLERQFSITASYANLLIGCLSFPS
VIVGIVVGGVLVKRLHLGPVGCGALCLLGMLLCLFFSLPLFFIGCSSHQIAGITHQTSAHPGLELSPSCM
EACSCPLDGFNPVCDPSTRVEYITPCHAGCSSWVVQDALDNSQVFYTNCSCVVEGNPVLAGSCDSTCSHL
VVPFLLLVSLGSALACLTHTPSFMLILRGVKKEDKTLAVGIQFMFLRILAWMPSPVIHGSAIDTTCVHWA
LSCGRRAVCRYYNNDLLRNRFIGLQFFFKTGSVICFALVLAVLRQQDKEARTKESRSSPAVEQQLLVSGP
GKKPEDSRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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