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Report for CCDS8277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8277.1 Public Homo sapiens 11 ME3 24 110 108 CCDS HistoryNCBI Gene:10873Re-query CCDS DB by CCDS ID:8277.1Re-query CCDS DB by GeneID:10873See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8277.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393324.7 ENSP00000376998.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393324.7Link to Ensembl Protein Viewer:ENSP00000376998.2Re-query CCDS DB by Nucleotide ID:ENST00000393324Re-query CCDS DB by Protein ID:ENSP00000376998
Original member Current member EBI ENST00000524826.8 ENSP00000431182.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524826.8Link to Ensembl Protein Viewer:ENSP00000431182.2Re-query CCDS DB by Nucleotide ID:ENST00000524826Re-query CCDS DB by Protein ID:ENSP00000431182
Original member Current member EBI ENST00000543262.5 ENSP00000440246.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543262.5Link to Ensembl Protein Viewer:ENSP00000440246.1Re-query CCDS DB by Nucleotide ID:ENST00000543262Re-query CCDS DB by Protein ID:ENSP00000440246
Original member Current member NCBI NM_001014811.2 NP_001014811.1 Accepted alive Link to Nucleotide Sequence:NM_001014811.2Link to Protein Sequence:NP_001014811.1Re-query CCDS DB by Nucleotide ID:NM_001014811Re-query CCDS DB by Protein ID:NP_001014811Link to BLAST:NP_001014811.1
Original member Current member NCBI NM_001161586.3 NP_001155058.1 Accepted alive Link to Nucleotide Sequence:NM_001161586.3Link to Protein Sequence:NP_001155058.1Re-query CCDS DB by Nucleotide ID:NM_001161586Re-query CCDS DB by Protein ID:NP_001155058Link to BLAST:NP_001155058.1
Original member Current member NCBI NM_001351934.2 NP_001338863.1 Accepted alive Link to Nucleotide Sequence:NM_001351934.2Link to Protein Sequence:NP_001338863.1Re-query CCDS DB by Nucleotide ID:NM_001351934Re-query CCDS DB by Protein ID:NP_001338863Link to BLAST:NP_001338863.1
Original member Current member NCBI NM_006680.3 NP_006671.2 Accepted alive Link to Nucleotide Sequence:NM_006680.3Link to Protein Sequence:NP_006671.2Re-query CCDS DB by Nucleotide ID:NM_006680Re-query CCDS DB by Protein ID:NP_006671Link to BLAST:NP_006671.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014811.1 604 Q16798-1 604 100% 0 0
NP_001155058.1 604 Q16798-1 604 100% 0 0
NP_001338863.1 604 Q16798-1 604 100% 0 0
NP_006671.2 604 Q16798-1 604 100% 0 0

Chromosomal Locations for CCDS 8277.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86441279 86441440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86442821 86442919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86446314 86446487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86447065 86447207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86448150 86448255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86449889 86450002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86450301 86450398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86465091 86465200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86487337 86487440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86497963 86498124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86508792 86508867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86556553 86556702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86559690 86559823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86671762 86671944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGGGTGCCGCGCTGGGGACAGGCACGCGGCTGGCTCCCTGGCCGGGCCGGGCCTGCGGCGCCCTCCCGC
GCTGGACACCCACCGCGCCCGCCCAAGGCTGCCACTCCAAGCCTGGCCCGGCGCGCCCTGTGCCCCTGAA
GAAGCGCGGATACGATGTCACCAGGAACCCTCATCTCAACAAGGGGATGGCCTTTACCCTTGAAGAAAGG
CTGCAGCTTGGAATCCACGGCCTAATCCCGCCCTGCTTTCTGAGCCAGGACGTCCAGCTCCTCCGAATCA
TGAGATATTACGAGCGGCAGCAGAGTGACCTGGACAAGTACATCATTCTCATGACACTCCAAGACCGGAA
CGAGAAGCTCTTCTACCGAGTGCTGACTTCGGACGTGGAGAAGTTCATGCCAATCGTGTACACGCCTACC
GTGGGGCTGGCCTGTCAGCACTATGGCCTGACTTTCCGCAGGCCCCGTGGACTGTTCATCACCATTCATG
ACAAAGGTCATCTTGCAACAATGCTGAATTCTTGGCCAGAAGACAATATTAAGGCCGTGGTGGTGACTGA
TGGGGAGCGCATCCTGGGCCTGGGAGACCTGGGCTGCTACGGCATGGGCATCCCTGTGGGCAAGCTGGCC
CTGTACACGGCATGCGGAGGGGTGAACCCGCAGCAGTGCCTCCCTGTGCTGCTGGACGTCGGCACCAACA
ATGAGGAGCTGCTCAGAGACCCTCTGTACATCGGCCTGAAACACCAGCGCGTGCACGGGAAGGCATACGA
TGACTTGCTGGATGAGTTCATGCAGGCTGTGACAGACAAGTTTGGAATAAATTGCCTCATCCAATTTGAA
GACTTCGCCAATGCCAATGCCTTCCGCCTGCTCAACAAATACCGTAACAAGTACTGCATGTTCAATGATG
ACATCCAAGGCACAGCCTCCGTTGCTGTGGCAGGGATCTTGGCTGCTCTGCGAATCACCAAGAACAAGCT
TTCCAATCACGTGTTTGTTTTCCAAGGTGCAGGCGAGGCAGCTATGGGCATTGCCCACCTCCTTGTCATG
GCCCTAGAGAAAGAAGGTGTACCGAAGGCAGAGGCCACAAGAAAGATCTGGATGGTGGACTCTAAAGGGC
TCATTGTCAAGGGGAGGAGCCACCTGAACCATGAAAAGGAGATGTTTGCCCAAGACCATCCTGAAGTCAA
CTCCCTGGAGGAGGTGGTGAGGCTGGTGAAGCCCACAGCCATCATAGGTGTTGCTGCCATCGCAGGAGCC
TTCACGGAGCAGATTCTGAGGGACATGGCCTCCTTCCACGAGCGCCCTATCATCTTTGCCCTGAGCAACC
CCACCAGCAAGGCCGAGTGCACGGCTGAGAAGTGCTACCGGGTCACCGAGGGCCGAGGGATTTTTGCCAG
TGGAAGTCCTTTTAAGAGTGTGACTCTGGAAGATGGCAAGACCTTCATTCCTGGGCAGGGAAACAATGCT
TACGTGTTCCCCGGGGTGGCACTGGGAGTCATCGCCGGCGGGATCCGGCACATCCCAGATGAGATCTTCC
TCCTGACAGCAGAGCAAATTGCCCAGGAAGTCTCTGAGCAGCATCTGTCCCAGGGGAGACTCTACCCACC
ACTCAGCACCATCCGAGACGTGTCTTTGAGAATTGCCATCAAAGTTCTCGACTACGCGTACAAACACAAC
CTGGCTTCCTACTACCCAGAGCCTAAGGACAAGGAGGCTTTTGTAAGATCCCTGGTCTACACTCCAGACT
ATGACTCCTTTACACTGGACAGCTACACTTGGCCCAAGGAAGCCATGAATGTTCAGACGGTCTGA

Translation (604 aa):
MGAALGTGTRLAPWPGRACGALPRWTPTAPAQGCHSKPGPARPVPLKKRGYDVTRNPHLNKGMAFTLEER
LQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPT
VGLACQHYGLTFRRPRGLFITIHDKGHLATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLA
LYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVHGKAYDDLLDEFMQAVTDKFGINCLIQFE
DFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVM
ALEKEGVPKAEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGVAAIAGA
FTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGKTFIPGQGNNA
YVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDYAYKHN
LASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYTWPKEAMNVQTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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