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Report for CCDS8501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8501.1 Public Homo sapiens 12 SLC6A12 24 110 108 CCDS HistoryNCBI Gene:6539Re-query CCDS DB by CCDS ID:8501.1Re-query CCDS DB by GeneID:6539See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8501.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359674.8 ENSP00000352702.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359674.8Link to Ensembl Protein Viewer:ENSP00000352702.4Re-query CCDS DB by Nucleotide ID:ENST00000359674Re-query CCDS DB by Protein ID:ENSP00000352702
Original member Current member EBI ENST00000397296.6 ENSP00000380464.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397296.6Link to Ensembl Protein Viewer:ENSP00000380464.2Re-query CCDS DB by Nucleotide ID:ENST00000397296Re-query CCDS DB by Protein ID:ENSP00000380464
Original member Current member EBI ENST00000424061.6 ENSP00000399136.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424061.6Link to Ensembl Protein Viewer:ENSP00000399136.2Re-query CCDS DB by Nucleotide ID:ENST00000424061Re-query CCDS DB by Protein ID:ENSP00000399136
Original member Current member EBI ENST00000536824.5 ENSP00000444268.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536824.5Link to Ensembl Protein Viewer:ENSP00000444268.1Re-query CCDS DB by Nucleotide ID:ENST00000536824Re-query CCDS DB by Protein ID:ENSP00000444268
Original member Current member EBI ENST00000684302.1 ENSP00000508194.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684302.1Link to Ensembl Protein Viewer:ENSP00000508194.1Re-query CCDS DB by Nucleotide ID:ENST00000684302Re-query CCDS DB by Protein ID:ENSP00000508194
Original member Current member NCBI NM_001122847.3 NP_001116319.1 Accepted alive Link to Nucleotide Sequence:NM_001122847.3Link to Protein Sequence:NP_001116319.1Re-query CCDS DB by Nucleotide ID:NM_001122847Re-query CCDS DB by Protein ID:NP_001116319Link to BLAST:NP_001116319.1
Original member Current member NCBI NM_001122848.3 NP_001116320.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001122848.3Link to Protein Sequence:NP_001116320.1Re-query CCDS DB by Nucleotide ID:NM_001122848Re-query CCDS DB by Protein ID:NP_001116320Link to BLAST:NP_001116320.1
Original member Current member NCBI NM_001206931.2 NP_001193860.1 Accepted alive Link to Nucleotide Sequence:NM_001206931.2Link to Protein Sequence:NP_001193860.1Re-query CCDS DB by Nucleotide ID:NM_001206931Re-query CCDS DB by Protein ID:NP_001193860Link to BLAST:NP_001193860.1
Original member Current member NCBI NM_003044.5 NP_003035.3 Accepted alive Link to Nucleotide Sequence:NM_003044.5Link to Protein Sequence:NP_003035.3Re-query CCDS DB by Nucleotide ID:NM_003044Re-query CCDS DB by Protein ID:NP_003035Link to BLAST:NP_003035.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116319.1 614 P48065 614 100% 0 0
NP_001116320.1 614 P48065 614 100% 0 0
NP_001193860.1 614 P48065 614 100% 0 0
NP_003035.3 614 P48065 614 100% 0 0

Chromosomal Locations for CCDS 8501.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 191068 191211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 192478 192648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 193277 193377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 195225 195327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 196124 196261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 196770 196882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 197377 197501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 197900 198003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 198797 198931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 200651 200783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 201762 201849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 202740 202880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 204564 204698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 209773 209986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGGACGGGAAGGTGGCAGTGCAAGAGTGTGGGCCTCCTGCAGTCTCCTGGGTCCCCGAGGAGGGAGAGA
AGTTGGACCAGGAAGACGAGGACCAGGTGAAGGATCGGGGCCAATGGACCAACAAGATGGAGTTTGTGCT
GTCAGTGGCCGGGGAGATCATTGGGCTGGGCAATGTCTGGAGGTTTCCCTATCTCTGCTACAAAAACGGA
GGTGGAGCCTTCTTCATCCCCTACTTCATCTTCTTCTTTGTCTGCGGCATCCCGGTGTTCTTCCTGGAGG
TGGCGTTGGGCCAATACACCAGCCAAGGGAGTGTCACAGCCTGGAGGAAGATCTGCCCCCTCTTCCAGGG
CATTGGTCTGGCATCTGTGGTCATCGAGTCATATTTGAATGTCTACTACATCATCATCCTTGCCTGGGCT
CTCTTCTACCTGTTCAGCTCCTTCACTTCTGAGCTGCCCTGGACGACCTGCAACAACTTTTGGAACACAG
AGCATTGCACGGACTTTCTGAACCACTCAGGAGCCGGCACAGTGACCCCATTTGAGAATTTTACCTCACC
TGTCATGGAATTCTGGGAGAGACGAGTTCTGGGCATCACCTCGGGCATCCATGACCTGGGCTCCCTGCGC
TGGGAGCTGGCCCTGTGCCTCCTGCTCGCCTGGGTCATCTGCTATTTCTGCATCTGGAAGGGGGTCAAGT
CCACAGGCAAGGTGGTTTATTTCACAGCCACGTTTCCGTACCTGATGCTTGTCATTTTGCTGATCAGAGG
TGTCACCCTTCCCGGAGCCTACCAGGGCATCATCTACTACTTGAAGCCAGATTTGTTCCGCCTCAAGGAC
CCTCAGGTGTGGATGGATGCGGGCACCCAGATCTTCTTCTCCTTTGCCATCTGCCAGGGGTGCCTGACAG
CCCTGGGCAGCTACAACAAGTATCACAACAACTGCTACAAGGACTGCATCGCCCTCTGCTTCCTGAACAG
TGCCACCAGCTTTGTGGCTGGGTTTGTTGTCTTCTCCATCCTGGGCTTCATGTCCCAAGAGCAAGGGGTG
CCCATTTCTGAAGTGGCCGAGTCAGGTCCTGGGCTGGCCTTCATCGCCTTCCCCAAGGCTGTGACTATGA
TGCCCTTATCCCAGCTGTGGTCCTGCCTGTTCTTTATCATGCTCATATTCCTAGGGCTGGACAGCCAGTT
TGTCTGTGTGGAGTGCCTGGTGACAGCCTCCATAGACATGTTCCCCAGGCAGCTCCGGAAGAGCGGGCGG
CGCGAGCTCCTCATCCTCACCATCGCCGTCATGTGCTACCTGATAGGGCTTTTCCTGGTCACCGAGGGCG
GGATGTACATCTTCCAGCTGTTTGACTACTATGCTTCCAGTGGCATATGCCTGCTGTTCCTGTCATTGTT
TGAAGTGGTCTGCATAAGCTGGGTGTATGGGGCGGACCGTTTCTATGACAACATTGAGGACATGATTGGC
TACCGGCCATGGCCCCTGGTGAAGATCTCCTGGCTCTTCCTGACCCCTGGACTTTGCCTGGCCACTTTCC
TCTTCTCCTTGAGCAAGTACACCCCCCTCAAGTACAACAACGTCTATGTGTACCCGCCCTGGGGATACTC
CATTGGCTGGTTCCTGGCTCTGTCCTCCATGGTCTGTGTCCCACTCTTCGTCGTCATCACCCTCCTGAAG
ACTCGGGGTCCTTTCAGGAAGCGTCTGCGTCAGCTCATCACCCCTGACTCCAGTCTGCCACAGCCCAAGC
AACATCCCTGCTTGGATGGCAGTGCTGGCCGGAACTTTGGGCCCTCCCCAACAAGGGAAGGACTGATAGC
CGGGGAGAAGGAGACCCATTTGTAG

Translation (614 aa):
MDGKVAVQECGPPAVSWVPEEGEKLDQEDEDQVKDRGQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYKNG
GGAFFIPYFIFFFVCGIPVFFLEVALGQYTSQGSVTAWRKICPLFQGIGLASVVIESYLNVYYIIILAWA
LFYLFSSFTSELPWTTCNNFWNTEHCTDFLNHSGAGTVTPFENFTSPVMEFWERRVLGITSGIHDLGSLR
WELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVILLIRGVTLPGAYQGIIYYLKPDLFRLKD
PQVWMDAGTQIFFSFAICQGCLTALGSYNKYHNNCYKDCIALCFLNSATSFVAGFVVFSILGFMSQEQGV
PISEVAESGPGLAFIAFPKAVTMMPLSQLWSCLFFIMLIFLGLDSQFVCVECLVTASIDMFPRQLRKSGR
RELLILTIAVMCYLIGLFLVTEGGMYIFQLFDYYASSGICLLFLSLFEVVCISWVYGADRFYDNIEDMIG
YRPWPLVKISWLFLTPGLCLATFLFSLSKYTPLKYNNVYVYPPWGYSIGWFLALSSMVCVPLFVVITLLK
TRGPFRKRLRQLITPDSSLPQPKQHPCLDGSAGRNFGPSPTREGLIAGEKETHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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