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Report for CCDS858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
858.1 Public Homo sapiens 1 SLC16A1 24 110 108 CCDS HistoryNCBI Gene:6566Re-query CCDS DB by CCDS ID:858.1Re-query CCDS DB by GeneID:6566See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369626.8 ENSP00000358640.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369626.8Link to Ensembl Protein Viewer:ENSP00000358640.4Re-query CCDS DB by Nucleotide ID:ENST00000369626Re-query CCDS DB by Protein ID:ENSP00000358640
Original member Current member EBI ENST00000429288.2 ENSP00000397106.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429288.2Link to Ensembl Protein Viewer:ENSP00000397106.2Re-query CCDS DB by Nucleotide ID:ENST00000429288Re-query CCDS DB by Protein ID:ENSP00000397106
Original member Current member EBI ENST00000443580.6 ENSP00000399104.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443580.6Link to Ensembl Protein Viewer:ENSP00000399104.2Re-query CCDS DB by Nucleotide ID:ENST00000443580Re-query CCDS DB by Protein ID:ENSP00000399104
Original member Current member EBI ENST00000458229.6 ENSP00000416167.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458229.6Link to Ensembl Protein Viewer:ENSP00000416167.2Re-query CCDS DB by Nucleotide ID:ENST00000458229Re-query CCDS DB by Protein ID:ENSP00000416167
Original member Current member EBI ENST00000538576.5 ENSP00000441065.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538576.5Link to Ensembl Protein Viewer:ENSP00000441065.1Re-query CCDS DB by Nucleotide ID:ENST00000538576Re-query CCDS DB by Protein ID:ENSP00000441065
Original member Current member EBI ENST00000679803.1 ENSP00000505879.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679803.1Link to Ensembl Protein Viewer:ENSP00000505879.1Re-query CCDS DB by Nucleotide ID:ENST00000679803Re-query CCDS DB by Protein ID:ENSP00000505879
Original member Current member NCBI NM_001166496.2 NP_001159968.1 Accepted alive Link to Nucleotide Sequence:NM_001166496.2Link to Protein Sequence:NP_001159968.1Re-query CCDS DB by Nucleotide ID:NM_001166496Re-query CCDS DB by Protein ID:NP_001159968Link to BLAST:NP_001159968.1
Original member Current member NCBI NM_003051.4 NP_003042.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003051.4Link to Protein Sequence:NP_003042.3Re-query CCDS DB by Nucleotide ID:NM_003051Re-query CCDS DB by Protein ID:NP_003042Link to BLAST:NP_003042.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159968.1 500 P53985-1 500 100% 0 0
NP_003042.3 500 P53985-1 500 100% 0 0

Chromosomal Locations for CCDS 858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 112913891 112914165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112917178 112918044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112921990 112922133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112929092 112929308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGCCACCAGCAGTTGGAGGTCCAGTTGGATACACCCCCCCAGATGGAGGCTGGGGCTGGGCAGTGGTAA
TTGGAGCTTTCATTTCCATCGGCTTCTCTTATGCATTTCCCAAATCAATTACTGTCTTCTTCAAAGAGAT
TGAAGGTATATTCCATGCCACCACCAGCGAAGTGTCATGGATATCCTCCATAATGTTGGCTGTCATGTAT
GGTGGAGGTCCTATCAGCAGTATCCTGGTGAATAAATATGGAAGTCGTATAGTCATGATTGTTGGTGGCT
GCTTGTCAGGCTGTGGCTTGATTGCAGCTTCTTTCTGTAACACCGTACAGCAACTATACGTCTGTATTGG
AGTCATTGGAGGTCTTGGGCTTGCCTTCAACTTGAATCCAGCTCTGACCATGATTGGCAAGTATTTCTAC
AAGAGGCGACCATTGGCCAACGGACTGGCCATGGCAGGCAGCCCTGTGTTCCTCTGTACTCTGGCCCCCC
TCAATCAGGTTTTCTTCGGTATCTTTGGATGGAGAGGAAGCTTTCTAATTCTTGGGGGCTTGCTACTAAA
CTGCTGTGTTGCTGGAGCCCTCATGCGACCAATCGGGCCCAAGCCAACCAAGGCAGGGAAAGATAAGTCT
AAAGCATCCCTTGAGAAAGCTGGAAAATCTGGTGTGAAAAAAGATCTGCATGATGCAAATACAGATCTTA
TTGGAAGACACCCTAAACAAGAGAAACGATCAGTCTTCCAAACAATTAATCAGTTCCTGGACTTAACCCT
ATTCACCCACAGAGGCTTTTTGCTATACCTCTCTGGAAATGTGATCATGTTTTTTGGACTCTTTGCACCT
TTGGTGTTTCTTAGTAGTTATGGGAAGAGTCAGCATTATTCTAGTGAGAAGTCTGCCTTCCTTCTTTCCA
TTCTGGCTTTTGTTGACATGGTAGCCCGACCATCTATGGGACTTGTAGCCAACACAAAGCCAATAAGACC
TCGAATTCAGTATTTCTTTGCGGCTTCCGTTGTTGCAAATGGAGTGTGTCATATGCTAGCACCTTTATCC
ACTACCTATGTTGGATTCTGTGTCTATGCGGGATTCTTTGGATTTGCCTTCGGGTGGCTCAGCTCCGTAT
TGTTTGAAACATTGATGGACCTTGTTGGACCCCAGAGGTTCTCCAGCGCTGTGGGATTGGTGACCATTGT
GGAATGCTGTCCTGTCCTCCTGGGGCCACCACTTTTAGGTCGGCTCAATGACATGTATGGAGACTACAAA
TACACATACTGGGCATGTGGCGTCGTCCTAATTATTTCAGGTATCTATCTCTTCATTGGCATGGGCATCA
ATTATCGACTTTTGGCAAAAGAACAGAAAGCAAACGAGCAGAAAAAGGAAAGTAAAGAGGAAGAGACCAG
TATAGATGTTGCTGGGAAGCCAAATGAAGTTACCAAAGCAGCAGAATCTCCGGACCAGAAAGACACAGAT
GGAGGGCCCAAGGAGGAGGAAAGTCCAGTCTGA

Translation (500 aa):
MPPAVGGPVGYTPPDGGWGWAVVIGAFISIGFSYAFPKSITVFFKEIEGIFHATTSEVSWISSIMLAVMY
GGGPISSILVNKYGSRIVMIVGGCLSGCGLIAASFCNTVQQLYVCIGVIGGLGLAFNLNPALTMIGKYFY
KRRPLANGLAMAGSPVFLCTLAPLNQVFFGIFGWRGSFLILGGLLLNCCVAGALMRPIGPKPTKAGKDKS
KASLEKAGKSGVKKDLHDANTDLIGRHPKQEKRSVFQTINQFLDLTLFTHRGFLLYLSGNVIMFFGLFAP
LVFLSSYGKSQHYSSEKSAFLLSILAFVDMVARPSMGLVANTKPIRPRIQYFFAASVVANGVCHMLAPLS
TTYVGFCVYAGFFGFAFGWLSSVLFETLMDLVGPQRFSSAVGLVTIVECCPVLLGPPLLGRLNDMYGDYK
YTYWACGVVLIISGIYLFIGMGINYRLLAKEQKANEQKKESKEEETSIDVAGKPNEVTKAAESPDQKDTD
GGPKEEESPV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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