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Report for CCDS8683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8683.1 Public Homo sapiens 12 SLCO1C1 24 110 108 CCDS HistoryNCBI Gene:53919Re-query CCDS DB by CCDS ID:8683.1Re-query CCDS DB by GeneID:53919See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8683.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266509.7 ENSP00000266509.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266509.7Link to Ensembl Protein Viewer:ENSP00000266509.2Re-query CCDS DB by Nucleotide ID:ENST00000266509Re-query CCDS DB by Protein ID:ENSP00000266509
Original member Current member NCBI NM_017435.5 NP_059131.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017435.5Link to Protein Sequence:NP_059131.1Re-query CCDS DB by Nucleotide ID:NM_017435Re-query CCDS DB by Protein ID:NP_059131Link to BLAST:NP_059131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059131.1 712 Q9NYB5-1 712 100% 0 0

Chromosomal Locations for CCDS 8683.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 20699577 20699705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20701318 20701459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20705949 20706081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20711386 20711510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20715139 20715285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20717132 20717230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20721804 20722049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20723090 20723254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20732909 20733104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20737107 20737272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20740184 20740368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20743305 20743369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20750675 20750792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20752306 20752528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGGACACTTCATCCAAAGAAAATATCCAGTTGTTCTGCAAAACTTCAGTGCAACCTGTTGGAAGGCCTT
CTTTTAAAACAGAATATCCCTCCTCAGAAGAAAAGCAACCATGCTGTGGTGAACTAAAGGTGTTCTTGTG
TGCCTTGTCTTTTGTTTACTTTGCCAAAGCATTGGCAGAAGGCTATCTGAAGAGCACCATCACTCAGATA
GAGAGAAGGTTTGATATCCCTTCTTCACTGGTGGGAGTTATTGATGGTAGTTTTGAAATTGGGAATCTCT
TAGTTATAACATTTGTTAGCTACTTTGGAGCCAAACTTCACAGGCCAAAAATAATTGGAGCAGGGTGTGT
AATCATGGGAGTTGGAACACTGCTCATTGCAATGCCTCAGTTCTTCATGGAGCAGTACAAATATGAGAGA
TATTCTCCTTCCTCCAATTCCACTCTCAGCATCTCTCCGTGTCTCCTAGAGTCAAGCAGTCAATTACCAG
TTTCAGTTATGGAAAAATCAAAATCCAAAATAAGTAACGAATGTGAAGTGGACACTAGCTCTTCCATGTG
GATTTATGTTTTCCTGGGCAATCTTCTTCGTGGAATAGGAGAAACTCCCATTCAGCCTTTGGGCATTGCC
TACCTGGATGATTTTGCCAGTGAAGACAATGCAGCTTTCTATATTGGGTGTGTGCAGACGGTTGCAATTA
TAGGACCAATCTTTGGTTTCCTGTTAGGCTCATTATGTGCCAAACTATATGTTGACATTGGCTTTGTAAA
CCTAGATCACATAACCATTACCCCAAAAGATCCCCAGTGGGTAGGAGCCTGGTGGCTTGGCTATCTAATA
GCAGGAATCATAAGTCTTCTTGCAGCTGTGCCTTTCTGGTATTTACCAAAGAGTTTACCAAGATCCCAAA
GTAGAGAGGATTCTAATTCTTCCTCTGAGAAATCCAAGTTTATTATAGATGATCACACAGACTACCAAAC
ACCCCAGGGAGAAAATGCAAAAATAATGGAAATGGCAAGAGATTTTCTTCCATCACTGAAGAATCTTTTT
GGAAACCCAGTATACTTCCTATATTTATGTACAAGCACTGTTCAGTTCAATTCTCTGTTCGGCATGGTGA
CGTACAAACCAAAGTACATTGAGCAGCAGTATGGACAGTCATCCTCCAGGGCCAACTTTGTGATCGGGCT
CATCAACATTCCAGCAGTGGCCCTTGGAATATTCTCTGGGGGGATAGTTATGAAAAAATTCAGAATCAGT
GTGTGTGGAGCTGCAAAACTCTACTTGGGATCATCTGTCTTTGGTTACCTCCTATTTCTTTCCCTGTTTG
CACTGGGCTGTGAAAATTCTGATGTGGCAGGACTAACTGTCTCCTACCAAGGAACCAAACCTGTCTCTTA
TCATGAACGAGCTCTCTTTTCAGATTGCAACTCAAGATGCAAATGTTCAGAGACAAAATGGGAACCCATG
TGCGGTGAAAATGGAATCACATATGTATCAGCTTGTCTTGCTGGTTGTCAAACCTCCAACAGGAGTGGAA
AAAATATTATATTTTACAACTGCACTTGTGTGGGAATTGCAGCTTCTAAATCCGGAAATTCCTCAGGCAT
AGTGGGAAGATGTCAGAAAGACAATGGATGTCCCCAAATGTTTCTGTATTTCCTTGTAATTTCAGTCATC
ACATCCTATACTTTATCCCTAGGTGGCATACCTGGATACATATTACTTCTGAGGTGCATTAAGCCACAGC
TTAAGTCTTTTGCCTTGGGTATCTACACATTAGCAATAAGAGTTCTTGCAGGAATCCCAGCTCCAGTGTA
TTTTGGAGTTTTGATTGATACTTCATGCCTCAAATGGGGATTTAAAAGATGTGGAAGTAGAGGATCATGC
AGATTATATGATTCAAATGTCTTCAGACATATATATCTGGGACTAACTGTGATACTGGGCACAGTGTCAA
TTCTCCTAAGCATTGCAGTACTTTTCATTTTAAAGAAAAATTATGTTTCAAAACACAGAAGTTTTATAAC
CAAGAGAGAAAGAACAATGGTGTCTACAAGATTCCAAAAGGAAAATTACACTACAAGTGATCATCTGCTA
CAACCCAACTACTGGCCAGGCAAGGAAACTCAACTTTAG

Translation (712 aa):
MDTSSKENIQLFCKTSVQPVGRPSFKTEYPSSEEKQPCCGELKVFLCALSFVYFAKALAEGYLKSTITQI
ERRFDIPSSLVGVIDGSFEIGNLLVITFVSYFGAKLHRPKIIGAGCVIMGVGTLLIAMPQFFMEQYKYER
YSPSSNSTLSISPCLLESSSQLPVSVMEKSKSKISNECEVDTSSSMWIYVFLGNLLRGIGETPIQPLGIA
YLDDFASEDNAAFYIGCVQTVAIIGPIFGFLLGSLCAKLYVDIGFVNLDHITITPKDPQWVGAWWLGYLI
AGIISLLAAVPFWYLPKSLPRSQSREDSNSSSEKSKFIIDDHTDYQTPQGENAKIMEMARDFLPSLKNLF
GNPVYFLYLCTSTVQFNSLFGMVTYKPKYIEQQYGQSSSRANFVIGLINIPAVALGIFSGGIVMKKFRIS
VCGAAKLYLGSSVFGYLLFLSLFALGCENSDVAGLTVSYQGTKPVSYHERALFSDCNSRCKCSETKWEPM
CGENGITYVSACLAGCQTSNRSGKNIIFYNCTCVGIAASKSGNSSGIVGRCQKDNGCPQMFLYFLVISVI
TSYTLSLGGIPGYILLLRCIKPQLKSFALGIYTLAIRVLAGIPAPVYFGVLIDTSCLKWGFKRCGSRGSC
RLYDSNVFRHIYLGLTVILGTVSILLSIAVLFILKKNYVSKHRSFITKRERTMVSTRFQKENYTTSDHLL
QPNYWPGKETQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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