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Report for CCDS8684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8684.1 Public Homo sapiens 12 SLCO1B3 24 110 108 CCDS HistoryNCBI Gene:28234Re-query CCDS DB by CCDS ID:8684.1Re-query CCDS DB by GeneID:28234See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8684.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261196.6 ENSP00000261196.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261196.6Link to Ensembl Protein Viewer:ENSP00000261196.2Re-query CCDS DB by Nucleotide ID:ENST00000261196Re-query CCDS DB by Protein ID:ENSP00000261196
Original member Current member EBI ENST00000381545.8 ENSP00000370956.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381545.8Link to Ensembl Protein Viewer:ENSP00000370956.4Re-query CCDS DB by Nucleotide ID:ENST00000381545Re-query CCDS DB by Protein ID:ENSP00000370956
Original member Current member NCBI NM_019844.4 NP_062818.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019844.4Link to Protein Sequence:NP_062818.1Re-query CCDS DB by Nucleotide ID:NM_019844Re-query CCDS DB by Protein ID:NP_062818Link to BLAST:NP_062818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062818.1 702 Q9NPD5-1 702 100% 0 0

Chromosomal Locations for CCDS 8684.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 20815739 20815822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20855028 20855169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20858439 20858571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20861017 20861138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20862412 20862558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20862756 20862854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20875235 20875477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20877772 20877936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20879436 20879631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20880855 20881020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20883418 20883602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20898436 20898500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20901350 20901467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20916004 20916247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGGACCAACATCAACATTTGAATAAAACAGCAGAGTCAGCATCTTCAGAGAAAAAGAAAACAAGACGCT
GC
AATGGATTCAAGATGTTCTTGGCAGCCCTGTCATTCAGCTATATTGCTAAAGCACTAGGTGGAATCAT
T
ATGAAAATTTCCATCACTCAAATAGAAAGGAGATTTGACATATCCTCTTCTCTTGCTGGTTTAATTGAT
GGA
AGCTTTGAAATTGGAAATTTGCTTGTGATTGTATTTGTAAGTTACTTTGGATCTAAACTACACAGAC
CG
AAGTTAATTGGAATTGGTTGTCTCCTTATGGGAACTGGAAGTATTTTGACATCTTTACCACATTTCTT
C
ATGGGATATTATAGGTATTCTAAAGAAACCCATATTAATCCATCAGAAAATTCAACATCAAGTTTATCA
ACC
TGTTTAATTAATCAAACCTTATCATTCAATGGAACATCACCTGAGATAGTAGAAAAAGATTGTGTAA
AG
GAATCTGGGTCACACATGTGGATCTATGTCTTCATGGGGAATATGCTTCGTGGCATAGGGGAAACCCC
C
ATAGTACCATTGGGGATTTCATACATTGATGATTTTGCAAAAGAAGGACATTCTTCCTTGTATTTAGGT
AGT
TTGAATGCAATAGGAATGATTGGTCCAGTCATTGGCTTTGCACTGGGATCTCTGTTTGCTAAAATGT
AC
GTGGATATTGGATATGTAGATCTGAGCACTATCAGAATAACTCCTAAGGACTCTCGTTGGGTTGGAGC
T
TGGTGGCTTGGTTTCCTTGTGTCTGGACTATTTTCCATTATTTCTTCCATACCATTTTTTTTCTTGCCG
AAA
AATCCAAATAAACCACAAAAAGAAAGAAAAATTTCACTATCATTGCATGTGCTGAAAACAAATGATG
AT
AGAAATCAAACAGCTAATTTGACCAACCAAGGAAAAAATGTTACCAAAAATGTGACTGGTTTTTTCCA
G
TCTTTGAAAAGCATCCTTACCAATCCCCTGTATGTTATATTTCTGCTTTTGACATTGTTACAAGTAAGC
AGC
TTTATTGGTTCTTTTACTTACGTCTTTAAATATATGGAGCAACAGTACGGTCAGTCTGCATCTCATG
CT
AACTTTTTGTTGGGAATCATAACCATTCCTACGGTTGCAACTGGAATGTTTTTAGGAGGATTTATCAT
T
AAAAAATTCAAATTGTCTTTAGTTGGAATTGCCAAATTTTCATTTCTTACTTCGATGATATCCTTCTTG
TTT
CAACTTCTATATTTCCCTCTAATCTGCGAAAGCAAATCAGTTGCCGGCCTAACCTTGACCTATGATG
G
A
AATAATTCAGTGGCATCTCATGTAGATGTACCACTTTCTTATTGCAACTCAGAGTGCAATTGTGATGA
A
AGTCAGTGGGAACCAGTCTGTGGGAACAATGGAATAACTTACCTGTCACCTTGTCTAGCAGGATGCAAA
TCC
TCAAGTGGTATTAAAAAGCATACAGTGTTTTATAACTGTAGTTGTGTGGAAGTAACTGGTCTCCAGA
AC
AGAAATTACTCAGCACACTTGGGTGAATGCCCAAGAGATAATACTTGTACAAGGAAATTTTTCATCTA
T
GTTGCAATTCAAGTCATAAACTCTTTGTTCTCTGCAACAGGAGGTACCACATTTATCTTGTTGACTGTG
AA
G
ATTGTTCAACCTGAATTGAAAGCACTTGCAATGGGTTTCCAGTCAATGGTTATAAGAACACTAGGAG
GA
ATTCTAGCTCCAATATATTTTGGGGCTCTGATTGATAAAACATGTATGAAGTGGTCCACCAACAGCTG
T
GGAGCACAAGGGGCTTGTAGGATATATAATTCCGTATTTTTTGGAAGGGTCTACTTGGGCTTATCTATA
GCT
TTAAGATTCCCAGCACTTGTTTTATATATTGTTTTCATTTTTGCTATGAAGAAAAAATTTCAAGGAA
AA
GATACCAAGGCATCGGACAATGAAAGAAAAGTAATGGATGAAGCAAACTTAGAATTCTTAAATAATGG
T
GAACATTTTGTACCTTCTGCTGGAACAGATAGTAAAACATGTAATTTGGACATGCAAGACAATGCTGCT
GCC
AACTAA


Translation (702 aa):
MDQHQHLNKTAESASSEKKKTRRCNGFKMFLAALSFSYIAKALGGIIMKISITQIERRFDISSSLAGLID
G
SFEI
GNLLVIVFVSYFGSKLHRPKLIGIGCLLMGTGSILTSLPHFFMGYYRYSKETHINPSENSTSSLS
T
CLINQTLSFNGTSPEIVEK
DCVKESGSHMWIYVFMGNMLRGIGETPIVPLGISYIDDFAKEGHSSLYLG
S
LNAIGMIGPVIGFALGSLFAKMYVDIGYVDL
STIRITPKDSRWVGAWWLGFLVSGLFSIISSIPFFFLP
K
NPNKPQKERKISLSLHVLKTNDDRNQTANLTNQGKNVTKNVT
GFFQSLKSILTNPLYVIFLLLTLLQVS
S
FIGSFTYVFKYMEQQYGQSASHANFLL
GIITIPTVATGMFLGGFIIKKFKLSLVGIAKFSFLTSMISFL
F
QLLYFPLICESKSVAGLTLTYD
GNNSVASHVDVPLSYCNSECNCDESQWEPVCGNNGITYLSPCLAGCK
S
SSGIKKHT
VFYNCSCVEVTGLQNRNYSAHLGECPRDNTCTRKFFIYVAIQVINSLFSATGGTTFILLTV
K
IVQPELKALAMGFQSMVIRTLGGILAPIYFGALIDKTCMKWSTNSCGAQGACRIYNSVFFGRVYLGLSI
A
LRFPALVLYIVFIFAMKKKFQGKDTKASDNERKVMDEANLEFLNNGEHFVPSAGTDSKTCNLDMQDNAA
A
N




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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