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Report for CCDS903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
903.1 Public Homo sapiens 1 HSD3B1 24 110 108 CCDS HistoryNCBI Gene:3283Re-query CCDS DB by CCDS ID:903.1Re-query CCDS DB by GeneID:3283See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 903.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369413.8 ENSP00000358421.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369413.8Link to Ensembl Protein Viewer:ENSP00000358421.3Re-query CCDS DB by Nucleotide ID:ENST00000369413Re-query CCDS DB by Protein ID:ENSP00000358421
Original member Current member EBI ENST00000528909.1 ENSP00000432268.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528909.1Link to Ensembl Protein Viewer:ENSP00000432268.1Re-query CCDS DB by Nucleotide ID:ENST00000528909Re-query CCDS DB by Protein ID:ENSP00000432268
Original member Current member NCBI NM_000862.3 NP_000853.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000862.3Link to Protein Sequence:NP_000853.1Re-query CCDS DB by Nucleotide ID:NM_000862Re-query CCDS DB by Protein ID:NP_000853Link to BLAST:NP_000853.1
Original member Current member NCBI NM_001328615.1 NP_001315544.1 Accepted alive Link to Nucleotide Sequence:NM_001328615.1Link to Protein Sequence:NP_001315544.1Re-query CCDS DB by Nucleotide ID:NM_001328615Re-query CCDS DB by Protein ID:NP_001315544Link to BLAST:NP_001315544.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000853.1 373 P14060 373 100% 0 0
NP_001315544.1 373 P14060 373 100% 0 0

Chromosomal Locations for CCDS 903.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 119507477 119507621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119511503 119511667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119513834 119514645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGACGGGCTGGAGCTGCCTTGTGACAGGAGCAGGAGGGTTTCTGGGACAGAGGATCATCCGCCTCTTGG
TGAAGGAGAAGGAGCTGAAGGAGATCAGGGTCTTGGACAAGGCCTTCGGACCAGAATTGAGAGAGGAATT
TTCTAAACTCCAGAACAAGACCAAGCTGACAGTGCTGGAAGGAGACATTCTGGATGAGCCATTCCTGAAG
AGAGCCTGCCAGGACGTCTCGGTCATCATCCACACCGCCTGTATCATTGATGTCTTCGGTGTCACTCACA
GAGAGTCTATCATGAATGTCAATGTGAAAGGTACCCAGCTCCTGTTAGAGGCCTGTGTCCAAGCTAGTGT
GCCAGTCTTCATCTACACCAGTAGCATAGAGGTAGCCGGGCCCAACTCCTACAAGGAAATCATCCAGAAT
GGCCATGAAGAAGAGCCTCTGGAAAACACATGGCCCGCTCCATACCCACACAGCAAAAAGCTTGCTGAGA
AGGCTGTACTGGCGGCTAACGGGTGGAATCTGAAAAACGGCGGCACCCTGTACACTTGTGCCTTACGACC
CATGTATATCTATGGGGAAGGAAGCCGATTCCTTTCTGCTAGTATAAACGAGGCCCTGAACAACAATGGG
ATCCTGTCAAGTGTTGGAAAGTTCTCCACTGTTAACCCAGTCTATGTTGGCAATGTGGCCTGGGCCCACA
TTCTGGCCTTGAGGGCCCTGCAGGACCCCAAGAAGGCCCCAAGCATCCGAGGACAGTTCTACTATATCTC
AGATGACACGCCTCACCAAAGCTATGATAACCTTAATTACACCCTGAGCAAAGAGTTCGGCCTCCGCCTT
GATTCCAGATGGAGCTTTCCTTTATCCCTGATGTATTGGATTGGCTTCCTGCTGGAAATAGTGAGCTTCC
TACTCAGGCCAATTTACACCTATCGACCGCCCTTCAACCGCCACATAGTCACATTGTCAAATAGCGTATT
CACCTTCTCTTATAAGAAGGCTCAGCGAGATCTGGCGTATAAGCCACTCTACAGCTGGGAGGAAGCCAAG
CAGAAAACGGTGGAGTGGGTTGGTTCCCTTGTGGACCGGCACAAGGAGACCCTGAAGTCCAAGACTCAGT
GA

Translation (373 aa):
MTGWSCLVTGAGGFLGQRIIRLLVKEKELKEIRVLDKAFGPELREEFSKLQNKTKLTVLEGDILDEPFLK
RACQDVSVIIHTACIIDVFGVTHRESIMNVNVKGTQLLLEACVQASVPVFIYTSSIEVAGPNSYKEIIQN
GHEEEPLENTWPAPYPHSKKLAEKAVLAANGWNLKNGGTLYTCALRPMYIYGEGSRFLSASINEALNNNG
ILSSVGKFSTVNPVYVGNVAWAHILALRALQDPKKAPSIRGQFYYISDDTPHQSYDNLNYTLSKEFGLRL
DSRWSFPLSLMYWIGFLLEIVSFLLRPIYTYRPPFNRHIVTLSNSVFTFSYKKAQRDLAYKPLYSWEEAK
QKTVEWVGSLVDRHKETLKSKTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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