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Report for CCDS9373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9373.1 Public Homo sapiens 13 SLC25A15 24 110 108 CCDS HistoryNCBI Gene:10166Re-query CCDS DB by CCDS ID:9373.1Re-query CCDS DB by GeneID:10166See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338625.9 ENSP00000342267.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338625.9Link to Ensembl Protein Viewer:ENSP00000342267.4Re-query CCDS DB by Nucleotide ID:ENST00000338625Re-query CCDS DB by Protein ID:ENSP00000342267
Original member Current member NCBI NM_014252.4 NP_055067.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014252.4Link to Protein Sequence:NP_055067.1Re-query CCDS DB by Nucleotide ID:NM_014252Re-query CCDS DB by Protein ID:NP_055067Link to BLAST:NP_055067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055067.1 301 Q9Y619 301 100% 0 0

Chromosomal Locations for CCDS 9373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 40793227 40793281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 40799057 40799315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 40805118 40805255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 40807294 40807463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 40808438 40808596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 40809543 40809667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGAAATCCAATCCTGCTATCCAGGCTGCCATTGACCTCACAGCGGGGGCTGCAGGAGGTACAGCATGTG
TACTGACCGGGCAGCCCTTTGACACAATGAAAGTGAAGATGCAGACGTTCCCTGACCTGTACCGGGGCCT
CACCGACTGCTGCCTGAAGACTTACTCCCAGGTGGGCTTCCGTGGCTTCTACAAGGGTACCAGTCCAGCA
CTAATCGCCAACATCGCTGAGAACTCAGTCCTCTTCATGTGCTACGGCTTCTGCCAGCAGGTGGTGCGGA
AAGTGGCTGGATTGGACAAGCAGGCAAAGCTGAGTGATCTGCAGAATGCAGCCGCCGGTTCCTTCGCCTC
TGCCTTTGCTGCACTGGTGCTCTGCCCCACGGAGCTCGTGAAGTGCCGGCTGCAGACCATGTATGAGATG
GAGACATCAGGGAAGATAGCCAAGAGCCAGAATACAGTGTGGTCTGTCATCAAAAGTATTCTTAGGAAAG
ATGGCCCCTTGGGGTTCTACCATGGACTCTCAAGCACTTTACTTCGAGAAGTACCAGGCTATTTCTTCTT
CTTCGGTGGCTATGAACTGAGCCGGTCCTTTTTTGCATCAGGGAGATCAAAAGATGAATTAGGCCCTGTA
CCTTTGATGTTAAGTGGTGGAGTTGGTGGGATTTGCCTCTGGCTTGCGGTATACCCAGTGGATTGTATCA
AATCCAGAATTCAAGTTCTTTCCATGTCTGGAAAACAGGCAGGATTTATCAGAACCTTTATAAATGTTGT
GAAAAATGAAGGAATAACGGCCTTATATTCTGGACTGAAACCTACTATGATTCGAGCATTCCCTGCCAAT
GGAGCACTCTTTTTGGCCTACGAATATAGCAGGAAGTTGATGATGAACCAGTTGGAAGCATACTGA

Translation (301 aa):
MKSNPAIQAAIDLTAGAAGGTACVLTGQPFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGFRGFYKGTSPA
LIANIAENSVLFMCYGFCQQVVRKVAGLDKQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEM
ETSGKIAKSQNTVWSVIKSILRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPV
PLMLSGGVGGICLWLAVYPVDCIKSRIQVLSMSGKQAGFIRTFINVVKNEGITALYSGLKPTMIRAFPAN
GALFLAYEYSRKLMMNQLEAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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