NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9471.1 Public Homo sapiens 13 TGDS 24 110 108 CCDS HistoryNCBI Gene:23483Re-query CCDS DB by CCDS ID:9471.1Re-query CCDS DB by GeneID:23483See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261296.7 ENSP00000261296.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261296.7Link to Ensembl Protein Viewer:ENSP00000261296.5Re-query CCDS DB by Nucleotide ID:ENST00000261296Re-query CCDS DB by Protein ID:ENSP00000261296
Original member Current member NCBI NM_014305.4 NP_055120.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014305.4Link to Protein Sequence:NP_055120.1Re-query CCDS DB by Nucleotide ID:NM_014305Re-query CCDS DB by Protein ID:NP_055120Link to BLAST:NP_055120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055120.1 350 O95455 350 100% 0 0

Chromosomal Locations for CCDS 9471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 94574782 94574852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94576314 94576411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94577371 94577429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94578005 94578170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94578730 94578773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94579894 94579953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94581091 94581189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94583094 94583236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94590853 94590943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94592241 94592309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94593841 94593907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94596051 94596136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGTCGGCGGCGTGTTGGGAGGAACCGTGGGGTCTTCCCGGCGGCTTTGCGAAGCGGGTCCTGGTGACCG
GCGGTGCTGGTTTCATTGCATCACATATGATTGTCTCTTTAGTGGAAGATTATCCAAACTATATGATCAT
AAATCTAGACAAGCTGGATTACTGTGCAAGCTTGAAGAATCTTGAAACCATTTCTAACAAACAGAACTAC
AAATTTATACAGGGTGACATATGTGATTCTCACTTTGTGAAACTGCTTTTTGAAACAGAGAAAATAGATA
TAGTACTACATTTTGCCGCACAAACACATGTAGATCTTTCATTCGTACGTGCCTTTGAGTTTACCTATGT
TAATGTTTATGGCACTCACGTTTTGGTAAGTGCTGCTCATGAAGCCAGAGTGGAGAAGTTTATTTATGTC
AGCACAGATGAAGTATATGGTGGCAGTCTTGATAAGGAATTTGATGAATCTTCACCCAAACAACCTACAA
ATCCTTATGCATCATCTAAAGCAGCTGCTGAATGTTTTGTACAGTCTTACTGGGAACAATATAAGTTTCC
AGTTGTCATCACAAGAAGCAGTAATGTTTATGGACCACATCAATATCCAGAAAAGGTTATTCCAAAATTT
ATATCTTTGCTACAGCACAACAGGAAATGTTGCATTCATGGGTCAGGGCTTCAAACAAGAAACTTCCTTT
ATGCTACTGATGTTGTAGAAGCATTTCTCACTGTCCTCAAAAAAGGGAAACCAGGTGAAATTTATAACAT
CGGAACCAATTTTGAAATGTCAGTTGTCCAGCTTGCCAAAGAACTAATACAACTGATCAAAGAGACCAAT
TCAGAGTCTGAAATGGAAAATTGGGTTGATTATGTTAATGATAGACCCACCAATGACATGAGATACCCAA
TGAAGTCAGAAAAAATACATGGCTTAGGATGGAGACCTAAAGTGCCTTGGAAAGAAGGAATAAAGAAAAC
AATTGAATGGTACAGAGAGAATTTTCACAACTGGAAGAATGTGGAAAAGGCATTAGAACCCTTTCCGGTA
TAA

Translation (350 aa):
MSAACWEEPWGLPGGFAKRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNY
KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYV
STDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPEKVIPKF
ISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETN
SESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYRENFHNWKNVEKALEPFPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH