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Report for CCDS98.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
98.2 Public Homo sapiens 1 SLC2A7 24 110 108 CCDS HistoryNCBI Gene:155184Re-query CCDS DB by CCDS ID:98.2Re-query CCDS DB by GeneID:155184See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 98.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400906.2 ENSP00000383698.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400906.2Link to Ensembl Protein Viewer:ENSP00000383698.1Re-query CCDS DB by Nucleotide ID:ENST00000400906Re-query CCDS DB by Protein ID:ENSP00000383698
Original member Current member NCBI NM_207420.3 NP_997303.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207420.3Link to Protein Sequence:NP_997303.2Re-query CCDS DB by Nucleotide ID:NM_207420Re-query CCDS DB by Protein ID:NP_997303Link to BLAST:NP_997303.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997303.2 512 Q6PXP3 512 100% 0 0

Chromosomal Locations for CCDS 98.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 9003300 9003518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9004752 9004879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9007310 9007385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9010143 9010244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9013525 9013635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9014681 9014868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9015117 9015242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9018223 9018375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9019209 9019333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9022918 9023078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9024976 9025074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9026295 9026345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGAGAACAAAGAGGCGGGAACCCCTCCACCCATTCCATCCAGGGAGGGGCGGCTCCAGCCGACGCTGT
TGCTGGCGACACTGAGCGCGGCCTTTGGCTCAGCCTTCCAGTACGGCTACAACCTCTCTGTGGTCAACAC
GCCGCACAAGGTCTTCAAGTCATTTTACAACGAAACCTACTTTGAGCGACACGCAACATTCATGGACGGG
AAGCTCATGCTGCTTCTATGGTCTTGCACCGTCTCCATGTTTCCTCTGGGCGGCCTGTTGGGGTCATTGC
TCGTGGGCCTGCTGGTTGATAGCTGCGGCAGAAAGGGGACCCTGCTGATCAACAACATCTTTGCCATCAT
CCCCGCCATCCTGATGGGAGTCAGCAAAGTGGCCAAGGCTTTTGAGCTGATCGTCTTTTCCCGAGTGGTG
CTGGGAGTCTGTGCAGGCATCTCCTACAGCGCCCTTCCCATGTACCTGGGAGAACTGGCCCCCAAGAACC
TGAGAGGCATGGTGGGAACAATGACCGAGGTTTTCGTCATCGTTGGAGTCTTCCTAGCACAGATCTTCAG
CCTCCAGGCCATCTTGGGCAACCCGGCAGGCTGGCCGGTGCTTCTGGCGCTCACAGGGGTGCCCGCCCTG
CTGCAGCTGCTGACCCTGCCCTTCTTCCCCGAAAGCCCCCGCTACTCCCTGATTCAGAAAGGAGATGAAG
CCACAGCGCGACAAGCTCTGAGGAGGCTGAGAGGCCACACGGACATGGAGGCCGAGCTGGAGGACATGCG
TGCGGAGGCCCGGGCCGAGCGCGCCGAGGGCCACCTGTCTGTGCTGCACCTCTGTGCCCTGCGGTCCCTG
CGCTGGCAGCTCCTCTCCATCATCGTGCTCATGGCCGGCCAGCAGCTGTCGGGCATCAATGCGATCAACT
ACTATGCGGACACCATCTACACATCTGCGGGCGTGGAGGCCGCTCACTCCCAATATGTAACGGTGGGCTC
TGGCGTCGTCAACATAGTGATGACCATCACCTCGGCTGTCCTTGTGGAGCGGCTGGGACGGCGGCACCTC
CTGCTGGCCGGCTACGGCATCTGCGGCTCTGCCTGCCTGGTGCTGACGGTGGTGCTCCTATTCCAGAACA
GGGTCCCCGAGCTGTCCTACCTCGGCATCATCTGTGTCTTTGCCTACATCGCGGGACATTCCATTGGGCC
CAGTCCTGTCCCCTCGGTGGTGAGGACCGAGATCTTCCTGCAGTCCTCCCGGCGGGCAGCTTTCATGGTG
GACGGGGCAGTGCACTGGCTCACCAACTTCATCATAGGCTTCCTGTTCCCATCCATCCAGGAGGCCATCG
GTGCCTACAGTTTCATCATCTTTGCCGGAATCTGCCTCCTCACTGCGATTTACATCTACGTGGTTATTCC
GGAGACCAAGGGCAAAACATTTGTGGAGATAAACCGCATTTTTGCCAAGAGAAACAGGGTGAAGCTTCCA
GAGGAGAAAGAAGAAACCATTGATGCTGGGCCTCCCACAGCCTCTCCTGCCAAGGAAACTTCCTTTTAG

Translation (512 aa):
MENKEAGTPPPIPSREGRLQPTLLLATLSAAFGSAFQYGYNLSVVNTPHKVFKSFYNETYFERHATFMDG
KLMLLLWSCTVSMFPLGGLLGSLLVGLLVDSCGRKGTLLINNIFAIIPAILMGVSKVAKAFELIVFSRVV
LGVCAGISYSALPMYLGELAPKNLRGMVGTMTEVFVIVGVFLAQIFSLQAILGNPAGWPVLLALTGVPAL
LQLLTLPFFPESPRYSLIQKGDEATARQALRRLRGHTDMEAELEDMRAEARAERAEGHLSVLHLCALRSL
RWQLLSIIVLMAGQQLSGINAINYYADTIYTSAGVEAAHSQYVTVGSGVVNIVMTITSAVLVERLGRRHL
LLAGYGICGSACLVLTVVLLFQNRVPELSYLGIICVFAYIAGHSIGPSPVPSVVRTEIFLQSSRRAAFMV
DGAVHWLTNFIIGFLFPSIQEAIGAYSFIIFAGICLLTAIYIYVVIPETKGKTFVEINRIFAKRNRVKLP
EEKEETIDAGPPTASPAKETSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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