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Report for CCDS99.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
99.1 Public Homo sapiens 1 SLC2A5 24 110 108 CCDS HistoryNCBI Gene:6518Re-query CCDS DB by CCDS ID:99.1Re-query CCDS DB by GeneID:6518See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 99.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377424.9 ENSP00000366641.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377424.9Link to Ensembl Protein Viewer:ENSP00000366641.4Re-query CCDS DB by Nucleotide ID:ENST00000377424Re-query CCDS DB by Protein ID:ENSP00000366641
Original member Current member NCBI NM_001328619.2 NP_001315548.1 Accepted alive Link to Nucleotide Sequence:NM_001328619.2Link to Protein Sequence:NP_001315548.1Re-query CCDS DB by Nucleotide ID:NM_001328619Re-query CCDS DB by Protein ID:NP_001315548Link to BLAST:NP_001315548.1
Original member Current member NCBI NM_003039.3 NP_003030.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003039.3Link to Protein Sequence:NP_003030.1Re-query CCDS DB by Nucleotide ID:NM_003039Re-query CCDS DB by Protein ID:NP_003030Link to BLAST:NP_003030.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001315548.1 501 P22732-1 501 100% 0 0
NP_003030.1 501 P22732-1 501 100% 0 0

Chromosomal Locations for CCDS 99.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 9037586 9037789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9037897 9038024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9038431 9038506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9038828 9038929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9039552 9039662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9039800 9039987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9040064 9040189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9041785 9041937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9047610 9047734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9057448 9057608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9058152 9058250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9069504 9069536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGAGCAACAGGATCAGAGCATGAAGGAAGGGAGGCTGACGCTTGTGCTTGCCCTGGCAACCCTGATAG
CTGCCTTTGGGTCATCCTTCCAGTATGGGTACAACGTGGCTGCTGTCAACTCCCCAGCACTGCTCATGCA
ACAATTTTACAATGAGACTTACTATGGTAGGACCGGTGAATTCATGGAAGACTTCCCCTTGACGTTGCTG
TGGTCTGTAACCGTGTCCATGTTTCCATTTGGAGGGTTTATCGGATCCCTCCTGGTCGGCCCCTTGGTGA
ATAAATTTGGCAGAAAAGGGGCCTTGCTGTTCAACAACATATTTTCTATCGTGCCTGCGATCTTAATGGG
ATGCAGCAGAGTCGCCACATCATTTGAGCTTATCATTATTTCCAGACTTTTGGTGGGAATATGTGCAGGT
GTATCTTCCAACGTGGTCCCCATGTACTTAGGGGAGCTGGCCCCTAAAAACCTGCGGGGGGCTCTCGGGG
TGGTGCCCCAGCTCTTCATCACTGTTGGCATCCTTGTGGCCCAGATCTTTGGTCTTCGGAATCTCCTTGC
AAACGTAGATGGCTGGCCGATCCTGCTGGGGCTGACCGGGGTCCCCGCGGCGCTGCAGCTCCTTCTGCTG
CCCTTCTTCCCCGAGAGCCCCAGGTACCTGCTGATTCAGAAGAAAGACGAAGCGGCCGCCAAGAAAGCCC
TACAGACGCTGCGCGGCTGGGACTCTGTGGACAGGGAGGTGGCCGAGATCCGGCAGGAGGATGAGGCAGA
GAAGGCCGCGGGCTTCATCTCCGTGCTGAAGCTGTTCCGGATGCGCTCGCTGCGCTGGCAGCTGCTGTCC
ATCATCGTCCTCATGGGCGGCCAGCAGCTGTCGGGCGTCAACGCTATCTACTACTACGCGGACCAGATCT
ACCTGAGCGCCGGCGTGCCGGAGGAGCACGTGCAGTACGTGACGGCCGGCACCGGGGCCGTGAACGTGGT
CATGACCTTCTGCGCCGTGTTCGTGGTGGAGCTCCTGGGTCGGAGGCTGCTGCTGCTGCTGGGCTTCTCC
ATCTGCCTCATAGCCTGCTGCGTGCTCACTGCAGCTCTGGCACTGCAGGACACAGTGTCCTGGATGCCAT
ACATCAGCATCGTCTGTGTCATCTCCTACGTCATAGGACATGCCCTCGGGCCCAGTCCCATACCCGCGCT
GCTCATCACTGAGATCTTCCTGCAGTCCTCTCGGCCATCTGCCTTCATGGTGGGGGGCAGTGTGCACTGG
CTCTCCAACTTCACCGTGGGCTTGATCTTCCCGTTCATCCAGGAGGGCCTCGGCCCGTACAGCTTCATTG
TCTTCGCCGTGATCTGCCTCCTCACCACCATCTACATCTTCTTGATTGTCCCGGAGACCAAGGCCAAGAC
GTTCATAGAGATCAACCAGATTTTCACCAAGATGAATAAGGTGTCTGAAGTGTACCCGGAAAAGGAGGAA
CTGAAAGAGCTTCCACCTGTCACTTCGGAACAGTGA

Translation (501 aa):
MEQQDQSMKEGRLTLVLALATLIAAFGSSFQYGYNVAAVNSPALLMQQFYNETYYGRTGEFMEDFPLTLL
WSVTVSMFPFGGFIGSLLVGPLVNKFGRKGALLFNNIFSIVPAILMGCSRVATSFELIIISRLLVGICAG
VSSNVVPMYLGELAPKNLRGALGVVPQLFITVGILVAQIFGLRNLLANVDGWPILLGLTGVPAALQLLLL
PFFPESPRYLLIQKKDEAAAKKALQTLRGWDSVDREVAEIRQEDEAEKAAGFISVLKLFRMRSLRWQLLS
IIVLMGGQQLSGVNAIYYYADQIYLSAGVPEEHVQYVTAGTGAVNVVMTFCAVFVVELLGRRLLLLLGFS
ICLIACCVLTAALALQDTVSWMPYISIVCVISYVIGHALGPSPIPALLITEIFLQSSRPSAFMVGGSVHW
LSNFTVGLIFPFIQEGLGPYSFIVFAVICLLTTIYIFLIVPETKAKTFIEINQIFTKMNKVSEVYPEKEE
LKELPPVTSEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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