CHEBI:28862 - dGDP

Main ChEBI Ontology Automatic Xrefs Reactions Pathways Models
ChEBI Name dGDP
ChEBI ID CHEBI:28862
Definition A purine 2'-deoxyribonucleoside 5'-diphosphate having guanine as the nucleobase.
Stars This entity has been manually annotated by the ChEBI Team.
Secondary ChEBI IDs CHEBI:41949, CHEBI:10495, CHEBI:19245
Supplier Information eMolecules:474422, ZINC000000895111
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Acetone (2-propanone or dimethyl ketone) is an organic compound with the formula (CH3)2CO. It is the simplest and smallest ketone (R−C(=O)−R'). It is a colorless, highly volatile, and flammable liquid with a characteristic pungent odor. Acetone is miscible with water and serves as an important organic solvent in industry, home, and laboratory. About 6.7 million tonnes were produced worldwide in 2010, mainly for use as a solvent and for production of methyl methacrylate and bisphenol A, which are precursors to widely used plastics. It is a common building block in organic chemistry. It serves as a solvent in household products such as nail polish remover and paint thinner. It has volatile organic compound (VOC)-exempt status in the United States. Acetone is produced and disposed of in the human body through normal metabolic processes. Small quantities of it are present naturally in blood and urine. People with diabetic ketoacidosis produce it in larger amounts. Ketogenic diets that increase ketone bodies (acetone, β-hydroxybutyric acid and acetoacetic acid) in the blood are used to counter epileptic attacks in children who suffer from refractory epilepsy.
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Formula C10H15N5O10P2
Net Charge 0
Average Mass 427.20132
Monoisotopic Mass 427.02942
InChI InChI=1S/C10H15N5O10P2/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(24-6)2-23-27(21,22)25-26(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1
InChIKey CIKGWCTVFSRMJU-KVQBGUIXSA-N
SMILES Nc1nc2n(cnc2c(=O)[nH]1)[C@H]1C[C@H](O)[C@@H](COP(O)(=O)OP(O)(O)=O)O1
Metabolite of Species Details
Mus musculus (NCBI:txid10090) Source: BioModels - MODEL1507180067 See: PubMed
Escherichia coli (NCBI:txid562) See: PubMed
Roles Classification
Biological Role(s): fundamental metabolite
Any metabolite produced by all living cells.
mouse metabolite
Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
(via nucleoside 5'-diphosphate )
View more via ChEBI Ontology
ChEBI Ontology
Outgoing dGDP (CHEBI:28862) has role fundamental metabolite (CHEBI:78675)
dGDP (CHEBI:28862) is a deoxyguanosine phosphate (CHEBI:23625)
dGDP (CHEBI:28862) is a guanyl deoxyribonucleotide (CHEBI:63573)
dGDP (CHEBI:28862) is a purine 2'-deoxyribonucleoside 5'-diphosphate (CHEBI:37036)
dGDP (CHEBI:28862) is conjugate acid of dGDP(3−) (CHEBI:58595)
Incoming dGDP(3−) (CHEBI:58595) is conjugate base of dGDP (CHEBI:28862)
IUPAC Name
2'-deoxyguanosine 5'-(trihydrogen diphosphate)
Synonyms Sources
2'-deoxyguanosine 5'-diphosphate ChEBI
2'-Deoxyguanosine 5'-diphosphate KEGG COMPOUND
deoxyguanosine diphosphate ChEBI
dGDP KEGG COMPOUND
Manual Xrefs Databases
C00019355 KNApSAcK
C00361 KEGG COMPOUND
DB03491 DrugBank
Deoxyguanosine_diphosphate Wikipedia
DGDP MetaCyc
DGI PDBeChem
ECMDB00960 ECMDB
HMDB0000960 HMDB
YMDB00898 YMDB
View more database links
Registry Number Type Source
68703 Reaxys Registry Number Reaxys
Citations Types Sources
16240436 PubMed citation Europe PMC
22761426 PubMed citation Europe PMC
Last Modified
27 January 2016