CHEBI:17898 - all-trans-retinal

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ChEBI Name all-trans-retinal
ChEBI ID CHEBI:17898
ChEBI ASCII Name all-trans-retinal
Definition A retinal in which all four exocyclic double bonds have E- (trans-) geometry.
Stars This entity has been manually annotated by the ChEBI Team.
Secondary ChEBI IDs CHEBI:8814, CHEBI:22348, CHEBI:12776
Supplier Information ChemicalBook:CB6703879, eMolecules:594056, ZINC000004228262
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Retinal (also known as retinaldehyde) is a polyene chromophore. Retinal, bound to proteins called opsins, is the chemical basis of visual phototransduction, the light-detection stage of visual perception (vision). Some microorganisms use retinal to convert light into metabolic energy. One study suggests that approximately three billion years ago, most living organisms on Earth used retinal, rather than chlorophyll, to convert sunlight into energy. Because retinal absorbs mostly green light and transmits purple light, this gave rise to the Purple Earth hypothesis. Retinal itself is considered to be a form of vitamin A when eaten by an animal. There are many forms of vitamin A, all of which are converted to retinal, which cannot be made without them. The number of different molecules that can be converted to retinal varies from species to species. Retinal was originally called retinene, and was renamed after it was discovered to be vitamin A aldehyde. Vertebrate animals ingest retinal directly from meat, or they produce retinal from carotenoids – either from α-carotene or β-carotene – both of which are carotenes. They also produce it from β-cryptoxanthin, a type of xanthophyll. These carotenoids must be obtained from plants or other photosynthetic organisms. No other carotenoids can be converted by animals to retinal. Some carnivores cannot convert any carotenoids at all. The other main forms of vitamin A – retinol and a partially active form, retinoic acid – may both be produced from retinal. Invertebrates such as insects and squid use hydroxylated forms of retinal in their visual systems, which derive from conversion from other xanthophylls.
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Formula C20H28O
Net Charge 0
Average Mass 284.443
Monoisotopic Mass 284.21402
InChI InChI=1S/C20H28O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,15H,7,10,14H2,1-5H3/b9-6+,12-11+,16-8+,17-13+
InChIKey NCYCYZXNIZJOKI-OVSJKPMPSA-N
SMILES [H]C(=O)\C=C(/C)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C
Metabolite of Species Details
Mus musculus (NCBI:txid10090) Source: BioModels - MODEL1507180067 See: PubMed
Homo sapiens (NCBI:txid9606) See: DOI
Homo sapiens (NCBI:txid9606) Found in blood (UBERON:0000178). See: Geigy Scientific Tables, 8th Rev edition, pp. 165-177. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp., Basel, Switzerland c1981-1992.
Roles Classification
Biological Role(s): human metabolite
Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
(via retinal )
mouse metabolite
Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
gap junctional intercellular communication inhibitor
An inhibitor that interferes with the process of gap junctional intercellular communication.
metabolite
Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.
(via vitamin A )
fat-soluble vitamin (role)
Any vitamin that dissolves in fats and are stored in body tissues. Unlike the water-soluble vitamins, they are stored in the body for long periods of time and generally pose a greater risk for toxicity when consumed in excess.
(via vitamin A )
View more via ChEBI Ontology
ChEBI Ontology
Outgoing all-trans-retinal (CHEBI:17898) has role gap junctional intercellular communication inhibitor (CHEBI:67195)
all-trans-retinal (CHEBI:17898) has role human metabolite (CHEBI:77746)
all-trans-retinal (CHEBI:17898) has role mouse metabolite (CHEBI:75771)
all-trans-retinal (CHEBI:17898) is a retinal (CHEBI:15035)
all-trans-retinal (CHEBI:17898) is a vitamin A (CHEBI:12777)
Incoming (3R)-all-trans-3-hydroxyretinal (CHEBI:52228) has functional parent all-trans-retinal (CHEBI:17898)
(3S)-all-trans-3-hydroxyretinal (CHEBI:52229) has functional parent all-trans-retinal (CHEBI:17898)
all-trans-4-hydroxyretinal (CHEBI:139346) has functional parent all-trans-retinal (CHEBI:17898)
all-trans-4-oxoretinal (CHEBI:139347) has functional parent all-trans-retinal (CHEBI:17898)
N-retinylidenephosphatidylethanolamine (CHEBI:71063) has functional parent all-trans-retinal (CHEBI:17898)
IUPAC Name
(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenal
Synonyms Sources
all-E-retinal ChemIDplus
all-trans-retinal KEGG COMPOUND
all-trans-retinal UniProt
all-trans-retinaldehyde NIST Chemistry WebBook
all-trans-retinene KEGG COMPOUND
all-trans-vitamin A aldehyde KEGG COMPOUND
axerophthal MetaCyc
E-retinal ChemIDplus
retinal KEGG COMPOUND
retinaldehyde ChemIDplus
retinene KEGG COMPOUND
retinene 1 ChemIDplus
retinyl aldehyde ChemIDplus
trans-retinal ChemIDplus
trans-vitamin A aldehyde HMDB
vitamin A aldehyde KEGG COMPOUND
vitamin A1 aldehyde ChemIDplus
Manual Xrefs Databases
553582 ChemSpider
C00376 KEGG COMPOUND
FDB030668 FooDB
HMDB0001358 HMDB
LMPR01090002 LIPID MAPS
RET PDBeChem
Retinal Wikipedia
RETINAL MetaCyc
View more database links
Registry Numbers Types Sources
116-31-4 CAS Registry Number NIST Chemistry WebBook
116-31-4 CAS Registry Number ChemIDplus
1914183 Reaxys Registry Number Reaxys
Citations
Cheng X, He D, Liao C, Lin S, Tang L, Wang YL, Hu J, Li W, Liu Z, Wu Y, Liao Y (2021)
IL-1/IL-1R signaling induced by all-trans-retinal contributes to complement alternative pathway activation in retinal pigment epithelium.
Journal of cellular physiology 236, 3660-3674 [PubMed:33034385]
[show Abstract]
Kim HJ, Sparrow JR (2021)
Bisretinoid phospholipid and vitamin A aldehyde: shining a light.
Journal of lipid research 62, 100042 [PubMed:32371567]
[show Abstract]
Chen C, Chen J, Wang Y, Liu Z, Wu Y (2021)
Ferroptosis drives photoreceptor degeneration in mice with defects in all-trans-retinal clearance.
The Journal of biological chemistry 296, 100187 [PubMed:33334878]
[show Abstract]
Dreffs A, Lin CM, Liu X, Shanmugam S, Abcouwer SF, Kern TS, Antonetti DA (2020)
All-trans-Retinaldehyde Contributes to Retinal Vascular Permeability in Ischemia Reperfusion.
Investigative ophthalmology & visual science 61, 8 [PubMed:32492112]
[show Abstract]
Cubizolle A, Cia D, Moine E, Jacquemot N, Guillou L, Rosell M, Angebault-Prouteau C, Lenaers G, Meunier I, Vercauteren J, Durand T, Crauste C, Brabet P (2020)
Isopropyl-phloroglucinol-DHA protects outer retinal cells against lethal dose of all-trans-retinal.
Journal of cellular and molecular medicine 24, 5057-5069 [PubMed:32212312]
[show Abstract]
Zhang L, Zhou Y, Xia Q, Chen Y, Li J (2020)
All-trans-retinal induces autophagic cell death via oxidative stress and the endoplasmic reticulum stress pathway in human retinal pigment epithelial cells.
Toxicology letters 322, 77-86 [PubMed:31931077]
[show Abstract]
Wang K, Zhu X, Zhang K, Zhou F, Zhu L (2017)
Neuroprotective effect of tetramethylpyrazine against all-trans-retinal toxicity in the differentiated Y-79 cells via upregulation of IRBP expression.
Experimental cell research 359, 120-128 [PubMed:28780307]
[show Abstract]
Yu J, Chen K, Lucero RV, Ambrosi CM, Entcheva E (2015)
Cardiac Optogenetics: Enhancement by All-trans-Retinal.
Scientific reports 5, 16542 [PubMed:26568132]
[show Abstract]
Jeon EJ, Yoon BY, Lim JY, Oh HJ, Park HS, Park MJ, Lim MA, Park MK, Kim KW, Cho ML, Cho SG (2012)
Adoptive transfer of all-trans-retinal-induced regulatory T cells ameliorates experimental autoimmune arthritis in an interferon-gamma knockout model.
Autoimmunity 45, 460-469 [PubMed:22559266]
[show Abstract]
Kiser PD, Golczak M, Maeda A, Palczewski K (2012)
Key enzymes of the retinoid (visual) cycle in vertebrate retina.
Biochimica et biophysica acta 1821, 137-151 [PubMed:21447403]
[show Abstract]
Ruiz FX, Porté S, Parés X, Farrés J (2012)
Biological role of aldo-keto reductases in retinoic Acid biosynthesis and signaling.
Frontiers in pharmacology 3, 58 [PubMed:22529810]
[show Abstract]
Ashique AM, May SR, Kane MA, Folias AE, Phamluong K, Choe Y, Napoli JL, Peterson AS (2012)
Morphological defects in a novel Rdh10 mutant that has reduced retinoic acid biosynthesis and signaling.
Genesis (New York, N.Y. : 2000) 50, 415-423 [PubMed:22162152]
[show Abstract]
Park MK, Jhun JY, Lee SY, Oh HJ, Park MJ, Byun JK, Yoon BY, Park EM, Lee DG, Kwok SK, Park SH, Kim HY, Cho ML (2012)
Retinal attenuates inflammatory arthritis by reciprocal regulation of IL-17-producing T cells and Foxp3(+) regulatory T cells and the inhibition of osteoclastogenesis.
Immunology letters 148, 59-68 [PubMed:22841964]
[show Abstract]
Okano K, Maeda A, Chen Y, Chauhan V, Tang J, Palczewska G, Sakai T, Tsuneoka H, Palczewski K, Maeda T (2012)
Retinal cone and rod photoreceptor cells exhibit differential susceptibility to light-induced damage.
Journal of neurochemistry 121, 146-156 [PubMed:22220722]
[show Abstract]
Masutomi K, Chen C, Nakatani K, Koutalos Y (2012)
All-trans retinal mediates light-induced oxidation in single living rod photoreceptors.
Photochemistry and photobiology 88, 1356-1361 [PubMed:22417174]
[show Abstract]
Maeda T, Golczak M, Maeda A (2012)
Retinal photodamage mediated by all-trans-retinal.
Photochemistry and photobiology 88, 1309-1319 [PubMed:22428905]
[show Abstract]
Różanowska M, Handzel K, Boulton ME, Różanowski B (2012)
Cytotoxicity of all-trans-retinal increases upon photodegradation.
Photochemistry and photobiology 88, 1362-1372 [PubMed:22515697]
[show Abstract]
Simón-Vázquez R, Domínguez M, Lórenz-Fonfría VA, Alvarez S, Bourdelande JL, de Lera AR, Padrós E, Perálvarez-Marín A (2012)
Probing a polar cluster in the retinal binding pocket of bacteriorhodopsin by a chemical design approach.
PloS one 7, e42447 [PubMed:22879987]
[show Abstract]
Piechnick R, Ritter E, Hildebrand PW, Ernst OP, Scheerer P, Hofmann KP, Heck M (2012)
Effect of channel mutations on the uptake and release of the retinal ligand in opsin.
Proceedings of the National Academy of Sciences of the United States of America 109, 5247-5252 [PubMed:22431612]
[show Abstract]
Treves S, Thurnheer R, Mosca B, Vukcevic M, Bergamelli L, Voltan R, Oberhauser V, Ronjat M, Csernoch L, Szentesi P, Zorzato F (2012)
SRP-35, a newly identified protein of the skeletal muscle sarcoplasmic reticulum, is a retinol dehydrogenase.
The Biochemical journal 441, 731-741 [PubMed:21995425]
[show Abstract]
Chen C, Thompson DA, Koutalos Y (2012)
Reduction of all-trans-retinal in vertebrate rod photoreceptors requires the combined action of RDH8 and RDH12.
The Journal of biological chemistry 287, 24662-24670 [PubMed:22621924]
[show Abstract]
Maeda A, Golczak M, Chen Y, Okano K, Kohno H, Shiose S, Ishikawa K, Harte W, Palczewska G, Maeda T, Palczewski K (2011)
Primary amines protect against retinal degeneration in mouse models of retinopathies.
Nature chemical biology 8, 170-178 [PubMed:22198730]
[show Abstract]
Reichrath J, Lehmann B, Carlberg C, Varani J, Zouboulis CC (2007)
Vitamins as hormones.
Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme 39, 71-84 [PubMed:17326003]
[show Abstract]
Kaschula CH, Jin MH, Desmond-Smith NS, Travis GH (2006)
Acyl CoA:retinol acyltransferase (ARAT) activity is present in bovine retinal pigment epithelium.
Experimental eye research 82, 111-121 [PubMed:16054134]
[show Abstract]
Weiland JD, Liu W, Humayun MS (2005)
Retinal prosthesis.
Annual review of biomedical engineering 7, 361-401 [PubMed:16004575]
[show Abstract]
Mata NL, Ruiz A, Radu RA, Bui TV, Travis GH (2005)
Chicken retinas contain a retinoid isomerase activity that catalyzes the direct conversion of all-trans-retinol to 11-cis-retinol.
Biochemistry 44, 11715-11721 [PubMed:16128572]
[show Abstract]
Dréno B, Nocera T, Verrière F, Vienne MP, Ségard C, Vitse S, Carré C (2005)
Topical retinaldehyde with glycolic acid: study of tolerance and acceptability in association with anti-acne treatments in 1,709 patients.
Dermatology (Basel, Switzerland) 210 Suppl 1, 22-29 [PubMed:15724104]
[show Abstract]
Ruch S, Beyer P, Ernst H, Al-Babili S (2005)
Retinal biosynthesis in Eubacteria: in vitro characterization of a novel carotenoid oxygenase from Synechocystis sp. PCC 6803.
Molecular microbiology 55, 1015-1024 [PubMed:15686550]
[show Abstract]
Pulukuri S, Sitaramayya A (2004)
Retinaldehyde, a potent inhibitor of gap junctional intercellular communication.
Cell communication & adhesion 11, 25-33 [PubMed:15500295]
[show Abstract]
Dundar B, Bozdag-Dundar O, Can-Eke B, Coban T, Iscan M, Buyukbingol E (2002)
Synthesis and antioxidative properties of novel thiazolidinedione/imidazolidinedione compounds as retinoids.
Die Pharmazie 57, 438-441 [PubMed:12168520]
[show Abstract]
Last Modified
28 July 2021