CHEBI:16709 - pyridoxine

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ChEBI Name pyridoxine
ChEBI ID CHEBI:16709
Definition A hydroxymethylpyridine with hydroxymethyl groups at positions 4 and 5, a hydroxy group at position 3 and a methyl group at position 2. The 4-methanol form of vitamin B6, it is converted intoto pyridoxal phosphate which is a coenzyme for synthesis of amino acids, neurotransmitters, sphingolipids and aminolevulinic acid.
Stars This entity has been manually annotated by the ChEBI Team.
Secondary ChEBI IDs CHEBI:8671, CHEBI:14981, CHEBI:26429
Supplier Information ChemicalBook:CB8197940, ChemicalBook:CB0197939, eMolecules:593675, ZINC000000049154
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Pyridoxine (PN) is a form of vitamin B6 found commonly in food and used as a dietary supplement. As a supplement it is used to treat and prevent pyridoxine deficiency, sideroblastic anaemia, pyridoxine-dependent epilepsy, certain metabolic disorders, side effects or complications of isoniazid use, and certain types of mushroom poisoning. It is used by mouth or by injection. It is usually well tolerated. Occasionally side effects include headache, numbness, and sleepiness. Normal doses are safe during pregnancy and breastfeeding. Pyridoxine is in the vitamin B family of vitamins. It is required by the body to metabolise amino acids, carbohydrates, and lipids. Sources in the diet include meat, fish, fruit, vegetables, and grain.
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Formula C8H11NO3
Net Charge 0
Average Mass 169.180
Monoisotopic Mass 169.07389
InChI InChI=1S/C8H11NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,10-12H,3-4H2,1H3
InChIKey LXNHXLLTXMVWPM-UHFFFAOYSA-N
SMILES CC1=C(O)C(CO)=C(CO)C=N1
Metabolite of Species Details
Mus musculus (NCBI:txid10090) Source: BioModels - MODEL1507180067 See: PubMed
Saccharomyces cerevisiae (NCBI:txid4932) Source: yeast.sf.net See: PubMed
Escherichia coli (NCBI:txid562) See: PubMed
Homo sapiens (NCBI:txid9606) See: DOI
Homo sapiens (NCBI:txid9606) Found in blood (UBERON:0000178). See: PubMed
Homo sapiens (NCBI:txid9606) Found in urine (BTO:0001419). See: PubMed
Homo sapiens (NCBI:txid9606) From MetaboLights See: MetaboLights Study
Homo sapiens (NCBI:txid9606) From MetaboLights See: MetaboLights Study
Roles Classification
Biological Role(s): Escherichia coli metabolite
Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
Saccharomyces cerevisiae metabolite
Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae ).
mouse metabolite
Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
cofactor
An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group).
human metabolite
Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
water-soluble vitamin (role)
Any vitamin that dissolves in water and readily absorbed into tissues for immediate use. Unlike the fat-soluble vitamins, they are not stored in the body and need to be replenished regularly in the diet and will rarely accumulate to toxic levels since they are quickly excreted from the body via urine.
(via B vitamin )
Application(s): nutraceutical
A product in capsule, tablet or liquid form that provide essential nutrients, such as a vitamin, an essential mineral, a protein, an herb, or similar nutritional substance.
(via B vitamin )
View more via ChEBI Ontology
ChEBI Ontology
Outgoing pyridoxine (CHEBI:16709) has role Escherichia coli metabolite (CHEBI:76971)
pyridoxine (CHEBI:16709) has role Saccharomyces cerevisiae metabolite (CHEBI:75772)
pyridoxine (CHEBI:16709) has role cofactor (CHEBI:23357)
pyridoxine (CHEBI:16709) has role human metabolite (CHEBI:77746)
pyridoxine (CHEBI:16709) has role mouse metabolite (CHEBI:75771)
pyridoxine (CHEBI:16709) is a hydroxymethylpyridine (CHEBI:38196)
pyridoxine (CHEBI:16709) is a methylpyridines (CHEBI:25340)
pyridoxine (CHEBI:16709) is a monohydroxypyridine (CHEBI:38182)
pyridoxine (CHEBI:16709) is a vitamin B6 (CHEBI:27306)
Incoming 5'-O-β-D-glucosylpyridoxine (CHEBI:17382) has functional parent pyridoxine (CHEBI:16709)
pyridoxine 5'-phosphate (CHEBI:28803) has functional parent pyridoxine (CHEBI:16709)
pyridoxine hydrochloride (CHEBI:30961) has part pyridoxine (CHEBI:16709)
IUPAC Name
4,5-bis(hydroxymethyl)-2-methylpyridin-3-ol
INNs Sources
pyridoxina WHO MedNet
pyridoxine WHO MedNet
pyridoxine WHO MedNet
pyridoxinum WHO MedNet
Synonyms Sources
2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine ChemIDplus
2-methyl-3-hydroxy-4,5-di(hydroxymethyl)pyridine ChemIDplus
2-Methyl-3-hydroxy-4,5-dihydroxymethyl-pyridin ChemIDplus
2-methyl-3-hydroxy-4,5-dihydroxymethylpyridine NIST Chemistry WebBook
2-methyl-4,5-bis(hydroxymethyl)-3-hydroxypyridine ChemIDplus
2-methyl-4,5-dimethylol-pyridin-3-ol ChEBI
3-hydroxy-2-picoline-4,5-dimethanol ChemIDplus
3-hydroxy-4,5-bis(hydroxymethyl)-2-methylpyridine ChEBI
3-hydroxy-4,5-dimethylol-α-picoline NIST Chemistry WebBook
4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol ChEBI
5-hydroxy-6-methyl-3,4-pyridinedimethanol NIST Chemistry WebBook
piridossina HMDB
pyridoxine UniProt
Pyridoxol KEGG COMPOUND
pyridoxolum HMDB
vitamin B6 NIST Chemistry WebBook
Manual Xrefs Databases
1025 ChemSpider
2836 DrugCentral
C00001551 KNApSAcK
C00314 KEGG COMPOUND
D08454 KEGG DRUG
DB00165 DrugBank
FDB000574 FooDB
HMDB0000239 HMDB
LSM-5324 LINCS
Pyridoxine Wikipedia
PYRIDOXINE MetaCyc
UEG PDBeChem
View more database links
Registry Numbers Types Sources
139854 Reaxys Registry Number Reaxys
563676 Gmelin Registry Number Gmelin
65-23-6 CAS Registry Number ChemIDplus
65-23-6 CAS Registry Number NIST Chemistry WebBook
Citations
Richts B, Commichau FM (2021)
Underground metabolism facilitates the evolution of novel pathways for vitamin B6 biosynthesis.
Applied microbiology and biotechnology 105, 2297-2305 [PubMed:33665688]
[show Abstract]
Lee ASD (2021)
The Role of Vitamin B6 in Women's Health.
The Nursing clinics of North America 56, 23-32 [PubMed:33549283]
[show Abstract]
Are S, Gatreddi S, Jakkula P, Qureshi IA (2020)
Structural attributes and substrate specificity of pyridoxal kinase from Leishmania donovani.
International journal of biological macromolecules 152, 812-827 [PubMed:32105687]
[show Abstract]
Çatak J, Çaman R (2020)
Pyridoxal, pyridoxamine, and pyridoxine cooking loss: Characterizing vitamin B6 profiles of chicken meats before and after cooking
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[show Abstract]
Kim HH, Kang YR, Choi HY, Lee JY, Oh JB, Kim JS, Kim YC, Lee KW, Kwon YI (2019)
Postprandial anti-hyperglycemic effect of vitamin B6 (pyridoxine) administration in healthy individuals.
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[show Abstract]
Xu M, Yang X, Yang XA, Zhou L, Liu TZ, Fan Z, Jiang T (2016)
Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system.
Protein & cell 7, 403-416 [PubMed:27113583]
[show Abstract]
Nodwell MB, Koch MF, Alte F, Schneider S, Sieber SA (2014)
A subfamily of bacterial ribokinases utilizes a hemithioacetal for pyridoxal phosphate salvage.
Journal of the American Chemical Society 136, 4992-4999 [PubMed:24601602]
[show Abstract]
Ahmad I, Mirza T, Qadeer K, Nazim U, Vaid FH (2013)
Vitamin B6: deficiency diseases and methods of analysis.
Pakistan journal of pharmaceutical sciences 26, 1057-1069 [PubMed:24035968]
[show Abstract]
Jacobs DM, Spiesser L, Garnier M, de Roo N, van Dorsten F, Hollebrands B, van Velzen E, Draijer R, van Duynhoven J (2012)
SPE-NMR metabolite sub-profiling of urine.
Analytical and bioanalytical chemistry 404, 2349-2361 [PubMed:22932811]
[show Abstract]
Gori AM, Sofi F, Corsi AM, Gazzini A, Sestini I, Lauretani F, Bandinelli S, Gensini GF, Ferrucci L, Abbate R (2006)
Predictors of vitamin B6 and folate concentrations in older persons: the InCHIANTI study.
Clinical chemistry 52, 1318-1324 [PubMed:16690736]
[show Abstract]
Walter FG, Chase PB, Fernandez MC, Cameron D, Roe DJ, Wolfson M (2006)
Pyridoxine does not prevent hyperbaric oxygen-induced seizures in rats.
The Journal of emergency medicine 31, 135-138 [PubMed:17044573]
[show Abstract]
Chiang EP, Selhub J, Bagley PJ, Dallal G, Roubenoff R (2005)
Pyridoxine supplementation corrects vitamin B6 deficiency but does not improve inflammation in patients with rheumatoid arthritis.
Arthritis research & therapy 7, R1404-11 [PubMed:16277693]
[show Abstract]
Lheureux P, Penaloza A, Gris M (2005)
Pyridoxine in clinical toxicology: a review.
European journal of emergency medicine : official journal of the European Society for Emergency Medicine 12, 78-85 [PubMed:15756083]
[show Abstract]
Chen H, Xiong L (2005)
Pyridoxine is required for post-embryonic root development and tolerance to osmotic and oxidative stresses.
The Plant journal : for cell and molecular biology 44, 396-408 [PubMed:16236150]
[show Abstract]
Esteve-Romero J, Capella-Peiró ME, Monferrer-Pons L, Gil-Agustí M (2004)
Micellar liquid chromatography in clinical chemistry: application to the monitorization of B6 vitamins.
Clinica chimica acta; international journal of clinical chemistry 348, 69-77 [PubMed:15369738]
[show Abstract]
McCully KS (2004)
Homocysteine, vitamins, and prevention of vascular disease.
Military medicine 169, 325-329 [PubMed:15132238]
[show Abstract]
Pirulli D, Marangella M, Amoroso A (2003)
Primary hyperoxaluria: genotype-phenotype correlation.
Journal of nephrology 16, 297-309 [PubMed:12768081]
[show Abstract]
Wasilewska A, Narkiewicz M, Rutkowski B, Łysiak-Szydłowska W (2003)
Is there any relationship between lipids and vitamin B levels in persons with elevated risk of atherosclerosis?
Medical science monitor : international medical journal of experimental and clinical research 9, CR147-51 [PubMed:12640345]
[show Abstract]
Amoroso A, Pirulli D, Florian F, Puzzer D, Boniotto M, Crovella S, Zezlina S, Spanò A, Mazzola G, Savoldi S, Ferrettini C, Berutti S, Petrarulo M, Marangella M (2001)
AGXT gene mutations and their influence on clinical heterogeneity of type 1 primary hyperoxaluria.
Journal of the American Society of Nephrology : JASN 12, 2072-2079 [PubMed:11562405]
[show Abstract]
Plecko B, Stöckler-Ipsiroglu S, Paschke E, Erwa W, Struys EA, Jakobs C (2000)
Pipecolic acid elevation in plasma and cerebrospinal fluid of two patients with pyridoxine-dependent epilepsy.
Annals of neurology 48, 121-125 [PubMed:10894227]
[show Abstract]
Chen S, Ito M, Saijo T, Naito E, Kuroda Y (1999)
Molecular genetic analysis of pyridoxine-nonresponsive homocystinuric siblings with different blood methionine levels during the neonatal period.
The journal of medical investigation : JMI 46, 186-191 [PubMed:10687314]
[show Abstract]
Baldewicz T, Goodkin K, Feaster DJ, Blaney NT, Kumar M, Kumar A, Shor-Posner G, Baum M (1998)
Plasma pyridoxine deficiency is related to increased psychological distress in recently bereaved homosexual men.
Psychosomatic medicine 60, 297-308 [PubMed:9625217]
[show Abstract]
Manyam BV, Ferraro TN, Hare TA (1987)
Isoniazid-induced alteration of CSF neurotransmitter amino acids in Huntington's disease.
Brain research 408, 125-130 [PubMed:2885064]
[show Abstract]
Henderson JM, Codner MA, Hollins B, Kutner MH, Merrill AH (1986)
The fasting B6 vitamer profile and response to a pyridoxine load in normal and cirrhotic subjects.
Hepatology (Baltimore, Md.) 6, 464-471 [PubMed:3710434]
[show Abstract]
Brandon DL, Corse JW, Windle JJ, Layton LL (1985)
Two homogeneous immunoassays for pyridoxamine.
Journal of immunological methods 78, 87-94 [PubMed:2580028]
[show Abstract]
Temesvári P, Szilágyi I, Eck E, Boda D (1983)
Effects of an antenatal load of pyridoxine (vitamin B6) on the blood oxygen affinity and prolactin levels in newborn infants and their mothers.
Acta paediatrica Scandinavica 72, 525-529 [PubMed:6624427]
[show Abstract]
Kidd GS, Dimond R, Kark JA, Whorton N, Vigersky RA (1982)
The effects of pyridoxine on pituitary hormone secretion in amenorrhea-galactorrhea syndromes.
The Journal of clinical endocrinology and metabolism 54, 872-875 [PubMed:6801073]
[show Abstract]
Tolis G, Laliberté R, Guyda H, Naftolin F (1977)
Ineffectiveness of pyridoxine (B6) to alter secretion of growth hormone and prolactin and absence of therapeutic effects on galactorrhea-amenorrhea syndromes.
The Journal of clinical endocrinology and metabolism 44, 1197-1199 [PubMed:559690]
[show Abstract]
HOCH R, PRESTON J, KILLAM K (1953)
Pyridoxine, an important vitamin and coenzyme.
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Last Modified
29 June 2021