Gene: MSH5-SAPCD1 ENSG00000266027

Description

MSH5-SAPCD1 readthrough (NMD candidate) [Source:HGNC Symbol;Acc:HGNC:41994]

Gene Synonyms

MSH5-C6ORF26

Location

Scaffold HSCHR6_MHC_DBB_CTG1: 2,987,786-3,012,625 forward strand.

GRCh38:GL000252.2

View this gene on the primary assembly.

About this gene

This gene has 4 transcripts (splice variants) and 1 gene allele.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000583103.5	MSH5-SAPCD1-220	3992	851aa	ENSP00000462078.1	Nonsense mediated decay	A0A024RCV8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000476578.5	MSH5-SAPCD1-218	2217	264aa	ENSP00000463749.1	Nonsense mediated decay	H0YF11	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496211.1	MSH5-SAPCD1-219	950	29aa	ENSP00000463412.1	Nonsense mediated decay	H0YEB2	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000469909.2	MSH5-SAPCD1-217	711	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Gene: MSH5-SAPCD1 ENSG00000266027

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Gene: MSH5-SAPCD1 ENSG00000266027

Summary

About Us

Get help

Our sister sites

Follow us