Summary
Sequence
Protein Information
Genetic Variation
- Variant table
- Variant image
- Haplotypes
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENST00000615259.4 PDE7B-203

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Description

phosphodiesterase 7B [Source:HGNC Symbol;Acc:HGNC:8792]

Location

Chromosome 6: 136,038,291-136,195,565 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 19 domains and features, is associated with 65092 variant alleles and maps to 527 oligo probes.

Gene

This transcript is a product of gene ENSG00000171408.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000308191.11	PDE7B-201	5385	450aa	ENSP00000310661.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5175	Q9NP56	NM_018945.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000615259.4	PDE7B-203	5234	502aa	ENSP00000482117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1E5M1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000446774.1	PDE7B-202	711	200aa	ENSP00000403732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y689	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Protein summary

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Protein domains for ENSP00000482117.1

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