Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Haplotypes
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENST00000633277.1 CCL16-203

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Description

C-C motif chemokine ligand 16 [Source:HGNC Symbol;Acc:HGNC:10614]

Gene Synonyms

CKB12, HCC-4, LCC-1, LEC, LMC, MTN-1, NCC-4, SCYA16, SCYL4

Location

Scaffold HSCHR17_7_CTG4: 211,057-212,827 reverse strand.

About this transcript

This transcript has 3 exons and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSG00000275095.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000621559.2	CCL16-201	1506	120aa	ENSP00000482168.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O15467	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000631489.1	CCL16-202	1634	53aa	ENSP00000487933.1	Nonsense mediated decay		A0A087WUU4	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000633277.1	CCL16-203	687	95aa	ENSP00000488847.1	Nonsense mediated decay		A0A087WUE5	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Protein summary

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Protein domains for ENSP00000488847.1

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