Human (GRCh38.p14)
Description

LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17017]

Gene Synonyms

YDR378C

About this transcript

This transcript has 4 exons, is annotated with 16 domains and features, is associated with 6882 variant alleles and maps to 323 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000296581.11LSM6-201222680aaENSP00000296581.5
 
Protein coding
CCDS3767P62312 NM_007080.3MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000502781.5LSM6-202135280aaENSP00000422392.1
 
Protein coding
CCDS3767P62312 -GENCODE basicAPPRIS P1TSL:1
ENST00000649747.1LSM6-20845480aaENSP00000497311.1
 
Protein coding
CCDS3767P62312 -GENCODE basicAPPRIS P1
ENST00000504181.1LSM6-20454980aaENSP00000420929.1
 
Nonsense mediated decay
CCDS3767P62312 -TSL:2
ENST00000515311.5LSM6-20754580aaENSP00000427036.1
 
Nonsense mediated decay
CCDS3767P62312 -TSL:4
ENST00000503982.1LSM6-203820No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000510331.1LSM6-206561No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000507449.1LSM6-205371No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,226 bps, Translation length: 80 residues

MANE

This MANE Select transcript contains ENSP00000296581 and matches to NM_007080.3 and NP_009011.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62312

CCDS

This transcript is a member of the Human CCDS set: CCDS3767

Transcript Support Level (TSL)

TSL:1

Version

ENST00000296581.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.