Transcript: ENST00000327908.3 LRIT3-201

Description

leucine rich repeat, Ig-like and transmembrane domains 3 [Source:HGNC Symbol;Acc:HGNC:24783]

Gene Synonyms

CSNB1F, FIGLER4, FLJ44691

Location

Chromosome 4: 109,851,330-109,872,315 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 17 domains and features, is associated with 8585 variant alleles and maps to 256 oligo probes.

Gene

This transcript is a product of gene ENSG00000183423.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000594814.6	LRIT3-202	3661	679aa	ENSP00000469759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3688	Q3SXY7-1	NM_198506.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000327908.3	LRIT3-201	3781	496aa	ENSP00000328222.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A0MR64	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 3,781 bps, Translation length: 496 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000327908.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000327908.3 LRIT3-201

Summary

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Transcript: ENST00000327908.3 LRIT3-201

Summary

About Us

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