Transcript: ENST00000341259.7 SH2B3-201

Description

SH2B adaptor protein 3 [Source:HGNC Symbol;Acc:HGNC:29605]

Gene Synonyms

IDDM20, LNK

Location

Chromosome 12: 111,405,923-111,451,623 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 34 domains and features, is associated with 20502 variant alleles and maps to 465 oligo probes.

Gene

This transcript is a product of gene ENSG00000111252.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000341259.7	SH2B3-201	5431	575aa	ENSP00000345492.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9153	Q9UQQ2	NM_005475.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000538307.1	SH2B3-202	2062	373aa	ENSP00000440597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS76602	F5GYM4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000550925.2	SH2B3-203	648	216aa	ENSP00000473529.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GN84	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 5,431 bps, Translation length: 575 residues

MANE

This MANE Select transcript contains ENSP00000345492 and matches to NM_005475.3 and NP_005466.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UQQ2

CCDS

This transcript is a member of the Human CCDS set: CCDS9153

Transcript Support Level (TSL)

TSL:1

Version

ENST00000341259.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000341259.7 SH2B3-201

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Transcript: ENST00000341259.7 SH2B3-201

Summary

About Us

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