Transcript: ENST00000368808.3 MMP21-201

Description

matrix metallopeptidase 21 [Source:HGNC Symbol;Acc:HGNC:14357]

Location

Chromosome 10: 125,766,453-125,775,821 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 33 domains and features, is associated with 4790 variant alleles and maps to 296 oligo probes.

Gene

This transcript is a product of gene ENSG00000154485.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000368808.3	MMP21-201	1919	569aa	ENSP00000357798.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7647	Q8N119	NM_147191.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000651977.1	MMP21-203	1951	244aa	ENSP00000499059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C1J6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000652044.1	MMP21-204	1530	94aa	ENSP00000499009.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C1E5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000651834.1	MMP21-202	862	84aa	ENSP00000498515.1	Nonsense mediated decay		A0A494C0E5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,919 bps, Translation length: 569 residues

MANE

This MANE Select transcript contains ENSP00000357798 and matches to NM_147191.1 and NP_671724.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N119

CCDS

This transcript is a member of the Human CCDS set: CCDS7647

Transcript Support Level (TSL)

TSL:1

Version

ENST00000368808.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000368808.3 MMP21-201

Summary

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Transcript: ENST00000368808.3 MMP21-201

Summary

About Us

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