Human (GRCh38.p14)
Description

visual system homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12723]

Gene Synonyms

PPCD, PPCD1, PPD

Location
About this transcript

This transcript has 3 exons, is annotated with 16 domains and features, is associated with 1876 variant alleles and maps to 237 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000376709.9VSX1-2021941365aaENSP00000365899.3
 
Protein coding
CCDS13168Q9NZR4-1 NM_014588.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000429762.7VSX1-2051977301aaENSP00000401690.3
 
Protein coding
CCDS58767Q9NZR4-8 -GENCODE basicTSL:1
ENST00000444511.6VSX1-2061197236aaENSP00000387720.2
 
Protein coding
CCDS58766Q9NZR4-7 -GENCODE basicTSL:1
ENST00000376707.4VSX1-201943239aaENSP00000365897.3
 
Protein coding
CCDS13169Q9NZR4-2 -GENCODE basicTSL:1
ENST00000409285.6VSX1-2031486280aaENSP00000386612.2
 
Nonsense mediated decay
Q9NZR4-5 -TSL:1
ENST00000409958.6VSX1-2041305218aaENSP00000387069.2
 
Nonsense mediated decay
Q9NZR4-6 -TSL:1
ENST00000557285.1VSX1-207558No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 3, Coding exons: 3, Transcript length: 943 bps, Translation length: 239 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZR4

CCDS

This transcript is a member of the Human CCDS set: CCDS13169

Transcript Support Level (TSL)

TSL:1

Version

ENST00000376707.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.