Transcript: ENST00000415638.3 IGFALS-202

Description

insulin like growth factor binding protein acid labile subunit [Source:HGNC Symbol;Acc:HGNC:5468]

Gene Synonyms

ALS

Location

Chromosome 16: 1,790,476-1,793,732 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 48 domains and features, is associated with 2691 variant alleles and maps to 350 oligo probes.

Gene

This transcript is a product of gene ENSG00000099769.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000215539.4	IGFALS-201	2058	605aa	ENSP00000215539.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10446	P35858-1	NM_004970.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000415638.3	IGFALS-202	2136	643aa	ENSP00000416683.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53982	P35858-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000568221.1	IGFALS-203	730	131aa	ENSP00000456923.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BSX8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,136 bps, Translation length: 643 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35858

CCDS

This transcript is a member of the Human CCDS set: CCDS53982

Transcript Support Level (TSL)

TSL:2

Version

ENST00000415638.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000415638.3 IGFALS-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000415638.3 IGFALS-202

Summary

About Us

Get help

Our sister sites

Follow us