Transcript: ENST00000442009.6 POLR1E-203

Description

RNA polymerase I subunit E [Source:HGNC Symbol;Acc:HGNC:17631]

Gene Synonyms

FLJ13390, FLJ13970, PAF53, PRAF1, RPA49

Location

Chromosome 9: 37,485,948-37,503,553 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 1 domain and feature, is associated with 7495 variant alleles and maps to 482 oligo probes.

Gene

This transcript is a product of gene ENSG00000137054.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000377798.9	POLR1E-202	1855	419aa	ENSP00000367029.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6611	Q9GZS1-2	NM_022490.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000377792.3	POLR1E-201	2229	481aa	ENSP00000367023.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9GZS1-1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000442009.6	POLR1E-203	1805	141aa	ENSP00000399887.3	Nonsense mediated decay		E7EX70	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 13, Coding exons: 5, Transcript length: 1,805 bps, Translation length: 141 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000442009.6

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000442009.6 POLR1E-203

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Transcript: ENST00000442009.6 POLR1E-203

Summary

About Us

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