Human (GRCh38.p14)
Description

visual system homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12723]

Gene Synonyms

PPCD, PPCD1, PPD

Location
About this transcript

This transcript has 4 exons, is annotated with 16 domains and features, is associated with 5024 variant alleles and maps to 200 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000376709.9VSX1-2021941365aaENSP00000365899.3
 
Protein coding
CCDS13168Q9NZR4-1 NM_014588.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000429762.7VSX1-2051977301aaENSP00000401690.3
 
Protein coding
CCDS58767Q9NZR4-8 -GENCODE basicTSL:1
ENST00000444511.6VSX1-2061197236aaENSP00000387720.2
 
Protein coding
CCDS58766Q9NZR4-7 -GENCODE basicTSL:1
ENST00000376707.4VSX1-201943239aaENSP00000365897.3
 
Protein coding
CCDS13169Q9NZR4-2 -GENCODE basicTSL:1
ENST00000409285.6VSX1-2031486280aaENSP00000386612.2
 
Nonsense mediated decay
Q9NZR4-5 -TSL:1
ENST00000409958.6VSX1-2041305218aaENSP00000387069.2
 
Nonsense mediated decay
Q9NZR4-6 -TSL:1
ENST00000557285.1VSX1-207558No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,197 bps, Translation length: 236 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZR4

CCDS

This transcript is a member of the Human CCDS set: CCDS58766

Transcript Support Level (TSL)

TSL:1

Version

ENST00000444511.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.