Transcript: ENST00000471690.5 LTB-219

Description

lymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]

Gene Synonyms

P33, TNFC, TNFSF3

Location

Scaffold HSCHR6_MHC_MCF_CTG1: 2,922,453-2,924,325 reverse strand.

About this transcript

This transcript has 3 exons and maps to 1104 oligo probes.

Gene

This transcript is a product of gene ENSG00000236237.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000456113.2	LTB-217	897	244aa	ENSP00000404014.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q06643-1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000471690.5	LTB-219	853	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000461335.1	LTB-218	708	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 853 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000471690.5

Type

Protein coding CDS not defined

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000471690.5 LTB-219

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Transcript: ENST00000471690.5 LTB-219

Summary

About Us

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