Transcript: ENST00000534030.1 POLR2L-202

Description

RNA polymerase II, I and III subunit L [Source:HGNC Symbol;Acc:HGNC:9199]

Gene Synonyms

HRPB7.6, HSRPB10B, RBP10, RPABC5, RPB10BETA, RPB7.6

Location

Chromosome 11: 837,356-842,529 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 31 domains and features, is associated with 3345 variant alleles and maps to 256 oligo probes.

Gene

This transcript is a product of gene ENSG00000177700.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000322028.5	POLR2L-201	876	67aa	ENSP00000324124.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7720	P62875	NM_021128.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000534030.1	POLR2L-202	585	67aa	ENSP00000432807.1	Nonsense mediated decay	CCDS7720	P62875	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 585 bps, Translation length: 67 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62875

CCDS

This transcript is a member of the Human CCDS set: CCDS7720

Transcript Support Level (TSL)

TSL:4

Version

ENST00000534030.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000534030.1 POLR2L-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000534030.1 POLR2L-202

Summary

About Us

Get help

Our sister sites

Follow us