Transcript: ENST00000555504.1 BATF-202

Description

basic leucine zipper ATF-like transcription factor [Source:HGNC Symbol;Acc:HGNC:958]

Gene Synonyms

B-ATF, BATF1, SFA-2

Location

Chromosome 14: 75,522,560-75,546,993 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 10400 variant alleles and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSG00000156127.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000286639.8	BATF-201	913	125aa	ENSP00000286639.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9843	Q16520	NM_006399.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000555504.1	BATF-202	361	73aa	ENSP00000450486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V266	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000555795.1	BATF-203	617	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 361 bps, Translation length: 73 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000555504.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000555504.1 BATF-202

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Transcript: ENST00000555504.1 BATF-202

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About Us

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