Transcript: ENST00000617870.4 DSCAM-203

Description

DS cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]

Gene Synonyms

CHD2-42, CHD2-52

Location

Chromosome 21: 40,012,414-40,369,270 reverse strand.

About this transcript

This transcript has 30 exons, is annotated with 103 domains and features, is associated with 166287 variant alleles and maps to 776 oligo probes.

Gene

This transcript is a product of gene ENSG00000171587.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000400454.6	DSCAM-201	8571	2012aa	ENSP00000383303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42929	O60469-1	NM_001389.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000617870.4	DSCAM-203	6176	1847aa	ENSP00000478698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WUI7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000404019.2	DSCAM-202	5374	1746aa	ENSP00000385342.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WY19	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 30, Coding exons: 30, Transcript length: 6,176 bps, Translation length: 1,847 residues

Transcript Support Level (TSL)

TSL:5

Version

ENST00000617870.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000617870.4 DSCAM-203

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Transcript: ENST00000617870.4 DSCAM-203

Summary

About Us

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