Human (GRCh38.p14)
Description

class II major histocompatibility complex transactivator [Source:HGNC Symbol;Acc:HGNC:7067]

Gene Synonyms

C2TA, MHC2TA, NLRA

Location
About this transcript

This transcript has 18 exons, is annotated with 1 domain and feature, is associated with 26204 variant alleles and maps to 587 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000324288.14CIITA-201160611130aaENSP00000316328.8
 
Protein coding
CCDS10544A0A0B4J1S1 NM_000246.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000618327.4CIITA-21446571131aaENSP00000485010.1
 
Protein coding
CCDS73826A0A087X2I7 -GENCODE basicAPPRIS ALT2TSL:2
ENST00000381835.9CIITA-2022344546aaENSP00000371257.5
 
Protein coding
CCDS66943P33076-3 -GENCODE basicTSL:1
ENST00000646979.1CIITA-218153981aaENSP00000496240.1
 
Protein coding
A0A2R8Y7F5 -CDS 5' incomplete
ENST00000637439.1CIITA-216850260aaENSP00000489907.1
 
Protein coding
A0A1B0GU01 -TSL:5CDS 3' incomplete
ENST00000576601.1CIITA-212626177aaENSP00000459608.1
 
Protein coding
I3L2E5 -TSL:4CDS 3' incomplete
ENST00000636238.1CIITA-215498139aaENSP00000490205.1
 
Protein coding
A0A1B0GUQ8 -TSL:5CDS 3' incomplete
ENST00000618207.4CIITA-2132844353aaENSP00000484761.1
 
Nonsense mediated decay
Q29704 -TSL:5
ENST00000644232.1CIITA-217218781aaENSP00000495431.1
 
Nonsense mediated decay
A0A2R8YFU9 -CDS 5' incomplete
ENST00000571186.5CIITA-2051041172aaENSP00000459829.1
 
Nonsense mediated decay
I3L2P7 -TSL:5
ENST00000695879.1CIITA-2202894No protein-
 
Protein coding CDS not defined
---
ENST00000573379.1CIITA-2102147No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000537380.1CIITA-2031062No protein-
 
Protein coding CDS not defined
--TSL:1
ENST00000571545.1CIITA-207567No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000572665.1CIITA-208560No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000570546.5CIITA-2045342No protein-
 
Retained intron
--TSL:2
ENST00000573309.5CIITA-2093366No protein-
 
Retained intron
--TSL:1
ENST00000695878.1CIITA-2192334No protein-
 
Retained intron
---
ENST00000575513.1CIITA-211516No protein-
 
Retained intron
--TSL:2
ENST00000571190.1CIITA-206479No protein-
 
Retained intron
--TSL:NA
Statistics

Exons: 18, Coding exons: 11, Transcript length: 2,844 bps, Translation length: 353 residues

Transcript Support Level (TSL)

TSL:5

Version

ENST00000618207.4

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.