Transcript: ENST00000646783.1 VAX2-203

Description

ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]

Gene Synonyms

DRES93

Location

Chromosome 2: 70,921,207-70,964,458 forward strand.

About this transcript

This transcript has 13 exons, is associated with 19642 variant alleles and maps to 455 oligo probes.

Gene

This transcript is a product of gene ENSG00000116035.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000234392.3	VAX2-201	1161	290aa	ENSP00000234392.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1911	F1T0K5 Q9UIW0	NM_012476.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000432367.6	VAX2-202	1847	92aa	ENSP00000405114.2	Nonsense mediated decay		C9J5E3	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000646783.1	VAX2-203	1200	49aa	ENSP00000495231.1	Nonsense mediated decay		A0A2R8Y6H5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 2, Transcript length: 1,200 bps, Translation length: 49 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000646783.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000646783.1 VAX2-203

Summary

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Transcript: ENST00000646783.1 VAX2-203

Summary

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