Transcript: ENST00000650450.2 DCLRE1B-203

Description

DNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]

Gene Synonyms

APOLLO, FLJ12810, FLJ13998, SNM1B

Location

Chromosome 1: 113,905,326-113,914,086 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 20 domains and features, is associated with 4530 variant alleles and maps to 418 oligo probes.

Gene

This transcript is a product of gene ENSG00000118655.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000650450.2	DCLRE1B-203	3755	532aa	ENSP00000498042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS866	Q9H816	NM_022836.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000650596.1	DCLRE1B-204	1980	471aa	ENSP00000497882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B3ITQ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466480.2	DCLRE1B-201	3199	72aa	ENSP00000497696.1	Nonsense mediated decay		A0A3B3IT16	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000648795.1	DCLRE1B-202	1960	72aa	ENSP00000497557.1	Nonsense mediated decay		A0A3B3IT16	-	-
ENST00000697125.1	DCLRE1B-205	569	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000697126.1	DCLRE1B-206	3872	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,755 bps, Translation length: 532 residues

MANE

This MANE Select transcript contains ENSP00000498042 and matches to NM_022836.4 and NP_073747.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H816

CCDS

This transcript is a member of the Human CCDS set: CCDS866

Version

ENST00000650450.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000650450.2 DCLRE1B-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000650450.2 DCLRE1B-203

Summary

About Us

Get help

Our sister sites

Follow us