Transcript: ENST00000652082.1 SPATA16-202

Description

spermatogenesis associated 16 [Source:HGNC Symbol;Acc:HGNC:29935]

Gene Synonyms

NYD-SP12

Location

Chromosome 3: 172,889,363-172,977,052 reverse strand.

About this transcript

This transcript has 8 exons, is associated with 34540 variant alleles and maps to 271 oligo probes.

Gene

This transcript is a product of gene ENSG00000144962.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000351008.4	SPATA16-201	2074	569aa	ENSP00000341765.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3221	A0A140VJV8 Q9BXB7	NM_031955.6	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000652082.1	SPATA16-202	1124	214aa	ENSP00000498213.1	Nonsense mediated decay		A0A494BZR9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 6, Transcript length: 1,124 bps, Translation length: 214 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000652082.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000652082.1 SPATA16-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000652082.1 SPATA16-202

Summary

About Us

Get help

Our sister sites

Follow us