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Series GSE65633 Query DataSets for GSE65633
Status Public on Mar 01, 2015
Title RNA-seq analysis of neonatal mouse cochlear hair cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This study examined transcripts that are enriched in neonatal mouse cochlear hair cells. Hair cells were purified by FACS sorting for GFP fluorescence from the cochleas of transgenic mice in which the endogenous Atoh1 gene was fused with GFP
 
Overall design Two replicates of GFP+ hair cells were compared with all other cochlear cell types that were GFP-
 
Contributor(s) Groves AK
Citation(s) 25855195
NIH grant(s)
Grant ID Grant title Affiliation Name
R21 DC011657 Identifying the Atoh1 targetome in hair cells with deep sequencing BAYLOR COLLEGE OF MEDICINE GROVES
R01 DC006185 Genetic Regulation of Cochlear Development: Characterization of Inner Ear Stem Cells BAYLOR COLLEGE OF MEDICINE GROVES
Submission date Feb 04, 2015
Last update date May 15, 2019
Contact name Andrew Groves
E-mail(s) akgroves@bcm.edu
Phone 7137988743
Organization name Baylor College of Medicine
Department Molecular and Human Genetics
Street address 1 Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (4)
GSM1602228 Purified Atoh1-GFP+ cells from mouse cochlea_1
GSM1602229 Purified Atoh1-GFP+ cells from mouse cochlea_2
GSM1602230 Purified Atoh1-GFP- cells from mouse cochlea_1
Relations
BioProject PRJNA274564
SRA SRP053189

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65633_RAW.tar 6.5 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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