KEGG   PATHWAY: dre00564
Entry
dre00564                    Pathway                                
Name
Glycerophospholipid metabolism - Danio rerio (zebrafish)
Class
Metabolism; Lipid metabolism
Pathway map
dre00564  Glycerophospholipid metabolism
dre00564

Module
dre_M00090  Phosphatidylcholine (PC) biosynthesis, choline => PC [PATH:dre00564]
dre_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:dre00564]
dre_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:dre00564]
Other DBs
GO: 0006650
Organism
Danio rerio (zebrafish) [GN:dre]
Gene
449663  gpd1l; glycerol-3-phosphate dehydrogenase 1-like protein [KO:K00006] [EC:1.1.1.8]
325181  gpd1b; glycerol-3-phosphate dehydrogenase 1b [KO:K00006] [EC:1.1.1.8]
406615  gpd1c; glycerol-3-phosphate dehydrogenase 1c [KO:K00006] [EC:1.1.1.8]
550404  gpd1a; glycerol-3-phosphate dehydrogenase 1a [KO:K00006] [EC:1.1.1.8]
751628  gpd2; glycerol-3-phosphate dehydrogenase, mitochondrial [KO:K00111] [EC:1.1.5.3]
100332911  gpam; glycerol-3-phosphate acyltransferase 1, mitochondrial [KO:K00629] [EC:2.3.1.15]
558437  gpat2; glycerol-3-phosphate acyltransferase 2, mitochondrial [KO:K00629] [EC:2.3.1.15]
678522  gpat4; glycerol-3-phosphate acyltransferase 4 [KO:K13506] [EC:2.3.1.15]
567414  agpat9l; glycerol-3-phosphate acyltransferase 3-like [KO:K13506] [EC:2.3.1.15]
436958  gpat3; glycerol-3-phosphate acyltransferase 3 [KO:K13506] [EC:2.3.1.15]
777624  agpat2; 1-acyl-sn-glycerol-3-phosphate acyltransferase beta [KO:K13509] [EC:2.3.1.51]
406734  agpat3; 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma [KO:K13523] [EC:2.3.1.51 2.3.1.-]
406265  agpat4; 1-acyl-sn-glycerol-3-phosphate acyltransferase delta [KO:K13523] [EC:2.3.1.51 2.3.1.-]
767778  agpat5; 1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon [KO:K19007] [EC:2.3.1.51]
406554  lclat1; lysocardiolipin acyltransferase 1 [KO:K13513] [EC:2.3.1.- 2.3.1.51]
572841  mboat1; lysophospholipid acyltransferase 1 [KO:K13517] [EC:2.3.1.51 2.3.1.-]
570695  mboat2a; lysophospholipid acyltransferase 2 isoform X2 [KO:K13517] [EC:2.3.1.51 2.3.1.-]
692278  mboat2b; lysophospholipid acyltransferase 2b [KO:K13517] [EC:2.3.1.51 2.3.1.-]
572335  gnpat; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
336430  si:ch73-21k16.5; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
393393  adprm; manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
559124  ppap2d; phosphatidic acid phosphatase type 2D [KO:K01080] [EC:3.1.3.4]
557680  plpp3; phospholipid phosphatase 3 isoform X1 [KO:K01080] [EC:3.1.3.4]
563806  plpp2a; phospholipid phosphatase 2-like [KO:K01080] [EC:3.1.3.4]
335485  plpp2b; phospholipid phosphatase 2b [KO:K01080] [EC:3.1.3.4]
794598  phospholipid phosphatase 1-like [KO:K01080] [EC:3.1.3.4]
569053  plpp1a; phospholipid phosphatase 1 isoform X2 [KO:K01080] [EC:3.1.3.4]
799099  lpin1a; phosphatidate phosphatase LPIN1 [KO:K15728] [EC:3.1.3.4]
560638  si:ch73-21k16.1; phosphatidate phosphatase LPIN1 isoform X2 [KO:K15728] [EC:3.1.3.4]
558422  lipin2; phosphatidate phosphatase LPIN2 isoform X1 [KO:K15728] [EC:3.1.3.4]
641489  zgc:123305 [KO:K15728] [EC:3.1.3.4]
431758  plpp5; phospholipid phosphatase 5 [KO:K18693] [EC:3.6.1.75 3.1.3.4]
100334794  plpp4; phospholipid phosphatase 4 [KO:K18693] [EC:3.6.1.75 3.1.3.4]
553380  dgkza; diacylglycerol kinase zeta isoform X6 [KO:K00901] [EC:2.7.1.107]
100150463  dgke; diacylglycerol kinase epsilon [KO:K00901] [EC:2.7.1.107]
724010  dgkaa; diacylglycerol kinase, alpha a [KO:K00901] [EC:2.7.1.107]
567728  diacylglycerol kinase beta isoform X2 [KO:K00901] [EC:2.7.1.107]
557324  dgkb; diacylglycerol kinase beta [KO:K00901] [EC:2.7.1.107]
100536469  diacylglycerol kinase delta [KO:K00901] [EC:2.7.1.107]
100331649  dgki; diacylglycerol kinase iota [KO:K00901] [EC:2.7.1.107]
100137124  dgkh; diacylglycerol kinase eta isoform X5 [KO:K00901] [EC:2.7.1.107]
565122  si:dkey-172j4.3; diacylglycerol kinase delta isoform X2 [KO:K00901] [EC:2.7.1.107]
564739  dgkab; diacylglycerol kinase, alpha b [KO:K00901] [EC:2.7.1.107]
100148835  dgkzb; diacylglycerol kinase zeta isoform X1 [KO:K00901] [EC:2.7.1.107]
322605  chpt1; cholinephosphotransferase 1 [KO:K00994] [EC:2.7.8.2]
570720  cept1b; choline/ethanolaminephosphotransferase 1b [KO:K13644] [EC:2.7.8.1 2.7.8.2]
560225  cept1a; choline/ethanolaminephosphotransferase 1a [KO:K13644] [EC:2.7.8.1 2.7.8.2]
565743  pld2; phospholipase D2 isoform X1 [KO:K01115] [EC:3.1.4.4]
799278  si:ch211-168k14.2; phospholipase D1 isoform X4 [KO:K01115] [EC:3.1.4.4]
572492  pld1b; phospholipase D1 [KO:K01115] [EC:3.1.4.4]
556641  pld1a; phospholipase D1a [KO:K01115] [EC:3.1.4.4]
571938  pld3; phospholipase D3 [KO:K16860] [EC:3.1.4.4]
793137  lcat; phosphatidylcholine-sterol acyltransferase precursor [KO:K00650] [EC:2.3.1.43]
402802  pla2g12a; group XIIA secretory phospholipase A2 precursor [KO:K01047] [EC:3.1.1.4]
571738  pla2g1b; phospholipase A2 precursor [KO:K01047] [EC:3.1.1.4]
436622  pla2g10; group 10 secretory phospholipase A2 [KO:K01047] [EC:3.1.1.4]
406739  pla2g12b; group XIIB secretory phospholipase A2-like protein precursor [KO:K01047] [EC:3.1.1.4]
641423  pla2g3; group 3 secretory phospholipase A2 precursor [KO:K01047] [EC:3.1.1.4]
100149324  proca1; uncharacterized protein proca1 [KO:K01047] [EC:3.1.1.4]
492789  zgc:101699; uncharacterized protein LOC492789 [KO:K16342] [EC:3.1.1.4]
30554  pla2g4aa; cytosolic phospholipase A2 [KO:K16342] [EC:3.1.1.4]
565386  pla2g4f.2; cytosolic phospholipase A2 zeta-like isoform X1 [KO:K16342] [EC:3.1.1.4]
100148818  si:ch73-55i23.1; uncharacterized protein LOC100148818 [KO:K16342] [EC:3.1.1.4]
798864  pla2g4f.1; cytosolic phospholipase A2 zeta-like isoform X2 [KO:K16342] [EC:3.1.1.4]
559087  pla2g4ab; cytosolic phospholipase A2 [KO:K16342] [EC:3.1.1.4]
100148581  cytosolic phospholipase A2 gamma [KO:K16342] [EC:3.1.1.4]
406370  pla2g6; 85/88 kDa calcium-independent phospholipase A2 [KO:K16343] [EC:3.1.1.4]
560649  si:ch211-214p16.3; phospholipase B1, membrane-associated [KO:K14621] [EC:3.1.1.4 3.1.1.5]
101886068  si:dkey-177p2.18; phospholipase B1, membrane-associated [KO:K14621] [EC:3.1.1.4 3.1.1.5]
436896  rarres3l; retinoic acid receptor responder 3-like [KO:K16817] [EC:3.1.1.32 3.1.1.4]
767688  rarres3; retinoic acid receptor responder 3 [KO:K16817] [EC:3.1.1.32 3.1.1.4]
553683  lpcat2; lysophosphatidylcholine acyltransferase 2 [KO:K13510] [EC:2.3.1.23 2.3.1.67]
555969  lpcat1; lysophosphatidylcholine acyltransferase 1 [KO:K13510] [EC:2.3.1.23 2.3.1.67]
101884921  lysophosphatidylcholine acyltransferase 1-like [KO:K13510] [EC:2.3.1.23 2.3.1.67]
327566  lpcat4; lysophospholipid acyltransferase LPCAT4 [KO:K13512] [EC:2.3.1.23 2.3.1.-]
555566  lpcat3; lysophospholipid acyltransferase 5 [KO:K13515] [EC:2.3.1.23 2.3.1.-]
550279  lypla1; acyl-protein thioesterase 1 [KO:K06128] [EC:3.1.1.5]
335008  pla2g15; group XV phospholipase A2 precursor [KO:K06129] [EC:3.1.1.5]
393722  lypla2; acyl-protein thioesterase 2 [KO:K06130] [EC:3.1.1.5]
560986  pnpla6; neuropathy target esterase isoform X3 [KO:K14676] [EC:3.1.1.5]
503936  pnpla7b; patatin-like phospholipase domain-containing protein 7 isoform X4 [KO:K14676] [EC:3.1.1.5]
492483  gpcpd1; glycerophosphocholine phosphodiesterase GPCPD1 [KO:K18695] [EC:3.1.4.2]
100170938  chata; choline O-acetyltransferase [KO:K00623] [EC:2.3.1.6]
114549  ache; acetylcholinesterase precursor [KO:K01049] [EC:3.1.1.7]
558499  chka; choline kinase alpha [KO:K14156] [EC:2.7.1.32 2.7.1.82]
563589  chkb; choline/ethanolamine kinase [KO:K14156] [EC:2.7.1.32 2.7.1.82]
100002812  phospho1; probable phosphatase phospho1 [KO:K06124] [EC:3.1.3.75]
550327  pcyt1aa; choline-phosphate cytidylyltransferase A [KO:K00968] [EC:2.7.7.15]
100001552  pcyt1ba; choline-phosphate cytidylyltransferase B [KO:K00968] [EC:2.7.7.15]
553770  pcyt1ab; phosphate cytidylyltransferase 1A, choline b [KO:K00968] [EC:2.7.7.15]
555725  pcyt1bb; phosphate cytidylyltransferase 1B, choline b [KO:K00968] [EC:2.7.7.15]
557632  selenoi; ethanolaminephosphotransferase 1 [KO:K00993] [EC:2.7.8.1]
565971  etnk1; ethanolamine kinase 1 isoform X2 [KO:K00894] [EC:2.7.1.82]
555330  etnk2; ethanolamine kinase 2 [KO:K00894] [EC:2.7.1.82]
541449  zgc:113516; uncharacterized protein LOC541449 [KO:K00894] [EC:2.7.1.82]
450016  pcyt2; ethanolamine-phosphate cytidylyltransferase [KO:K00967] [EC:2.7.7.14]
767699  pmt; phosphoethanolamine methyltransferase [KO:K05929] [EC:2.1.1.103]
393421  etnppl; ethanolamine-phosphate phospho-lyase [KO:K14286] [EC:4.2.3.2]
393127  pemt; phosphatidylethanolamine N-methyltransferase [KO:K00551] [EC:2.1.1.17 2.1.1.71]
394161  cds2; phosphatidate cytidylyltransferase 2 [KO:K00981] [EC:2.7.7.41]
100002015  cds1; phosphatidate cytidylyltransferase 1 isoform X1 [KO:K00981] [EC:2.7.7.41]
334017  pla1a; phospholipase A1 member A precursor [KO:K13618] [EC:3.1.1.111]
393931  ptdss1a; phosphatidylserine synthase 1 [KO:K08729] [EC:2.7.8.-]
559442  ptdss1b; phosphatidylserine synthase 1 [KO:K08729] [EC:2.7.8.-]
100004136  ptdss2; phosphatidylserine synthase 2 [KO:K08730] [EC:2.7.8.29]
553433  pisd; phosphatidylserine decarboxylase proenzyme, mitochondrial [KO:K01613] [EC:4.1.1.65]
100534896  pgs1; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [KO:K00995] [EC:2.7.8.5]
405867  crls1; cardiolipin synthase (CMP-forming) [KO:K08744] [EC:2.7.8.41]
321965  tafazzin [KO:K13511] [EC:2.3.1.-]
561832  lpgat1; acyl-CoA:lysophosphatidylglycerol acyltransferase 1 [KO:K13514] [EC:2.3.1.-]
404620  cdipt; CDP-diacylglycerol--inositol 3-phosphatidyltransferase [KO:K00999] [EC:2.7.8.11]
393509  mboat7; lysophospholipid acyltransferase 7 [KO:K13516] [EC:2.3.1.-]
Compound
C00040  Acyl-CoA
C00065  L-Serine
C00084  Acetaldehyde
C00093  sn-Glycerol 3-phosphate
C00111  Glycerone phosphate
C00114  Choline
C00157  Phosphatidylcholine
C00189  Ethanolamine
C00269  CDP-diacylglycerol
C00307  CDP-choline
C00344  Phosphatidylglycerol
C00346  Ethanolamine phosphate
C00350  Phosphatidylethanolamine
C00416  Phosphatidate
C00513  CDP-glycerol
C00570  CDP-ethanolamine
C00588  Choline phosphate
C00623  sn-Glycerol 1-phosphate
C00641  1,2-Diacyl-sn-glycerol
C00670  sn-Glycero-3-phosphocholine
C00681  1-Acyl-sn-glycerol 3-phosphate
C01194  1-Phosphatidyl-D-myo-inositol
C01210  N-Methylethanolamine phosphate
C01233  sn-Glycero-3-phosphoethanolamine
C01241  Phosphatidyl-N-methylethanolamine
C01996  Acetylcholine
C02737  Phosphatidylserine
C03372  Acylglycerone phosphate
C03819  1-Acylglycerophosphoinositol
C03872  L-Serine-phosphoethanolamine
C03892  Phosphatidylglycerophosphate
C03974  2-Acyl-sn-glycerol 3-phosphate
C04230  1-Acyl-sn-glycero-3-phosphocholine
C04233  2-Acyl-sn-glycero-3-phosphocholine
C04308  Phosphatidyl-N-dimethylethanolamine
C04438  1-Acyl-sn-glycero-3-phosphoethanolamine
C04590  3-(O-Geranylgeranyl)-sn-glycerol 1-phosphate
C04638  2,3-Bis-(O-geranylgeranyl)-sn-glycerol 1-phosphate
C05973  2-Acyl-sn-glycero-3-phosphoethanolamine
C05974  2-Acyl-sn-glycero-3-phosphoserine
C05976  Aminoacyl-phosphatidylglycerol
C05980  Cardiolipin
C06771  Triethanolamine
C06772  Diethanolamine
C13482  Phosphodimethylethanolamine
C18059  CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol
C18125  1-Acyl-sn-glycero-3-phosphoserine
C18126  1-Acyl-sn-glycero-3-phosphoglycerol
C18129  Monolysocardiolipin
C18168  Diacylglycerylhomoserine
C18169  Diacylglyceryl-N,N,N-trimethylhomoserine
C20466  2,3-Bis-(O-geranylgeranyl)-sn-glycero-1-phospho-L-serine
C20518  2,3-Bis-(O-phytanyl)-sn-glycerol 1-phosphate
C22340  Heptaprenylglyceryl phosphate
C22341  Heptaprenylglycerol
C22342  Diacetylheptaprenylglycerol
Reference
PMID:1512203
  Authors
Racenis PV, Lai JL, Das AK, Mullick PC, Hajra AK, Greenberg ML.
  Title
The acyl dihydroxyacetone phosphate pathway enzymes for glycerolipid biosynthesis are present in the yeast Saccharomyces cerevisiae.
  Journal
J Bacteriol 174:5702-10 (1992)
DOI:10.1128/JB.174.17.5702-5710.1992
Reference
  Authors
Taniyama Y, Shibata S, Kita S, Horikoshi K, Fuse H, Shirafuji H, Sumino Y, Fujino M.
  Title
Cloning and expression of a novel lysophospholipase which structurally resembles lecithin cholesterol acyltransferase.
  Journal
Biochem Biophys Res Commun 257:50-6 (1999)
DOI:10.1006/bbrc.1999.0411
Reference
  Authors
Athenstaedt K, Daum G.
  Title
Phosphatidic acid, a key intermediate in lipid metabolism.
  Journal
Eur J Biochem 266:1-16 (1999)
DOI:10.1046/j.1432-1327.1999.00822.x
Reference
  Authors
Shields DJ, Lehner R, Agellon LB, Vance DE.
  Title
Membrane topography of human phosphatidylethanolamine N-methyltransferase.
  Journal
J Biol Chem 278:2956-62 (2003)
DOI:10.1074/jbc.M210904200
Reference
  Authors
Martinez-Morales F, Schobert M, Lopez-Lara IM, Geiger O.
  Title
Pathways for phosphatidylcholine biosynthesis in bacteria.
  Journal
Microbiology 149:3461-71 (2003)
DOI:10.1099/mic.0.26522-0
Reference
  Authors
Burgermeister M, Birner-Grunberger R, Nebauer R, Daum G.
  Title
Contribution of different pathways to the supply of phosphatidylethanolamine and phosphatidylcholine to mitochondrial membranes of the yeast Saccharomyces cerevisiae.
  Journal
Biochim Biophys Acta 1686:161-8 (2004)
DOI:10.1016/j.bbalip.2004.09.007
Reference
PMID:1649829
  Authors
Hsu L, Jackowski S, Rock CO
  Title
Isolation and characterization of Escherichia coli K-12 mutants lacking both 2-acyl-glycerophosphoethanolamine acyltransferase and acyl-acyl carrier protein synthetase activity.
  Journal
J Biol Chem 266:13783-8 (1991)
Reference
  Authors
Stone SJ, Vance JE.
  Title
Phosphatidylserine synthase-1 and -2 are localized to mitochondria-associated membranes.
  Journal
J Biol Chem 275:34534-40 (2000)
DOI:10.1074/jbc.M002865200
Related
pathway
dre00010  Glycolysis / Gluconeogenesis
dre00260  Glycine, serine and threonine metabolism
dre00561  Glycerolipid metabolism
dre00562  Inositol phosphate metabolism
dre00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
dre00565  Ether lipid metabolism
dre00620  Pyruvate metabolism
KO pathway
ko00564   
LinkDB

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