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si:ch211-250n8.1 si:ch211-250n8.1 [ Danio rerio (zebrafish) ]

Gene ID: 100001306, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch211-250n8.1provided by ZNC
Official Full Name
si:ch211-250n8.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-130603-2
See related
Ensembl:ENSDARG00000088736 AllianceGenome:ZFIN:ZDB-GENE-130603-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:ch211-250n8.1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (36413719..36427595)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (35740893..35754854)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 16a Neighboring gene galanin receptor type 2-like Neighboring gene unk zinc finger Neighboring gene unc-13 homolog D (C. elegans)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in tight junction assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in apical part of cell IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in bicellular tight junction IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein si:ch211-250n8.1
Names
zmp:0000000939

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    36413719..36427595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480398.1 → XP_021336073.1  uncharacterized protein si:ch211-250n8.1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q966
    Conserved Domains (3) summary
    cd00136
    Location:148 → 217
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd13168
    Location:274 → 400
    PTB_LOC417372; uncharacterized protein LOC417372 Phosphotyrosine-binding (PTB) PH-like fold
    cl02689
    Location:21 → 124
    RUN; RUN domain

  2. XM_021480397.1 → XP_021336072.1  uncharacterized protein si:ch211-250n8.1 isoform X1

    UniProtKB/TrEMBL
    A0A8M1PSI8, E7FGG0
    Related
    ENSDARP00000108809.1, ENSDART00000126325.3
    Conserved Domains (3) summary
    cd00136
    Location:183 → 252
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd13168
    Location:309 → 435
    PTB_LOC417372; uncharacterized protein LOC417372 Phosphotyrosine-binding (PTB) PH-like fold
    cl02689
    Location:35 → 159
    RUN; RUN domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394857.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    161161..175037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472582.1 → XP_021328257.1  uncharacterized protein si:ch211-250n8.1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q966
    Conserved Domains (3) summary
    cd00136
    Location:148 → 217
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd13168
    Location:274 → 400
    PTB_LOC417372; uncharacterized protein LOC417372 Phosphotyrosine-binding (PTB) PH-like fold
    cl02689
    Location:21 → 124
    RUN; RUN domain

  2. XM_001341292.8 → XP_001341328.6  uncharacterized protein si:ch211-250n8.1 isoform X1

    UniProtKB/TrEMBL
    A0A8M1PSI8, E7FGG0
    Conserved Domains (3) summary
    cd00136
    Location:183 → 252
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd13168
    Location:309 → 435
    PTB_LOC417372; uncharacterized protein LOC417372 Phosphotyrosine-binding (PTB) PH-like fold
    cl02689
    Location:35 → 159
    RUN; RUN domain
Nucleotide Protein
Heading Accession and Version

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