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Fdft1 farnesyl-diphosphate farnesyltransferase 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100689192, updated on 8-Mar-2024

Summary

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Gene symbol
Fdft1
Gene description
farnesyl-diphosphate farnesyltransferase 1
See related
Ensembl:ENSCGRG00015040545
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613673.1 (2164991..2193440)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (218183894..218212345, complement)

NW_003613673.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 4 Neighboring gene nei like DNA glycosylase 2 Neighboring gene cathepsin B Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of lipid metabolism and gene expression by fenofibrate in hamsters. Guo Q, et al. Biochim Biophys Acta, 2001 Oct 31. PMID 11731332
  2. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables farnesyl-diphosphate farnesyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables squalene synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene synthase
Names
Squalene synthetase
farnesyl diphosphate farnesyl transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613673.1 Reference CriGri_1.0 Primary Assembly

    Range
    2164991..2193440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016968526.3 → XP_016824015.1  squalene synthase isoform X2

    UniProtKB/TrEMBL
    A0A9J7F2I1

  2. XM_003497977.5 → XP_003498025.1  squalene synthase isoform X1

    See identical proteins and their annotated locations for XP_003498025.1

    UniProtKB/TrEMBL
    G3H0L7
    Conserved Domains (1) summary
    cl00210
    Location:38 → 370
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276807.1 Alternate CriGri-PICRH-1.0

    Range
    218183894..218212345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027390359.2 → XP_027246160.1  squalene synthase isoform X2

    UniProtKB/TrEMBL
    A0A9J7F2I1

  2. XM_027390358.2 → XP_027246159.1  squalene synthase isoform X1

    UniProtKB/TrEMBL
    G3H0L7
    Related
    ENSCGRP00015058801.1, ENSCGRT00015058169.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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